Locus 4050

Sequence ID 3L_DroMel_CAF1
Location 11,799,013 – 11,799,132
Length 119
Max. P 0.820596
window6308

overview

Window 8

Location 11,799,013 – 11,799,132
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 72.83
Mean single sequence MFE -41.84
Consensus MFE -16.08
Energy contribution -14.16
Covariance contribution -1.92
Combinations/Pair 1.40
Mean z-score -1.90
Structure conservation index 0.38
SVM decision value 0.68
SVM RNA-class probability 0.820596
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11799013 119 + 23771897
UUGGACGGGGCAGAGAAAAUCUCUCGGCAAUCAAAGAGAGCCGCUCGCCGCUGGCCAGGAAGUUCAGAGCCAGAGCCACACACUUUUCGGUAGAAAUUGCUGGCUCUCUUUGA-GUCAGU
...(((...((.((((.....)))).))..((((((((((((((..((..(((((...(.....)...))))).))........((((....))))..)).))))))))))))-)))... ( -43.90)
>DroPse_CAF1 12565 119 + 1
UCAGCCUUGGUACGGAAAACAAAUUCGAUAUGAUCGAUAUGCGCUCGCCACUGGCUAGAUAGUAGAGCGCCAAGGCAACGCAUUUGUCCAGGGAAAUUUCGAGCGAGCUUUUGCUUGCG-
....((((((.(((((........(((((...)))))..(((((((...((((......)))).))))((....))...)))))))))))))).........((((((....)))))).- ( -39.40)
>DroSec_CAF1 8549 119 + 1
UUGGACGGGGCAGAGAAAAUCUCUCGGCAAUCAGAGAUAGCCGCUCGCCGCUAGCCAGGAAGUUCAGGGCCAGAGCCACACACUUCUCGGUAGAAAUUACUGGCUCUCUUUGA-GUCAGU
.(((.((((((.((((.....))))(((.(((...))).))))).).))))))(((..(((((....(((....)))....)))))..))).......((((((((.....))-)))))) ( -44.00)
>DroSim_CAF1 8144 119 + 1
UUGGACGGGGCAGAGAAAAUCUCUCGGCAAUCAGAGAUAGCCGCUCGCCGCUAGCCAGGAAGUUCAGGGCCAGAGCCACACACUUUUCGGUAGAAAUUGCUGGCUCUCUUUGA-GUCAGU
.(((.((((((.((((.....))))(((.(((...))).))))).).))))))(((..(((((....(((....)))....)))))..))).......((((((((.....))-)))))) ( -42.50)
>DroPer_CAF1 13082 119 + 1
UCAGCCUUGGUACGGAAAACAAAUUCGAUAUAAUCGAUAUGCGCUCGCCACUGGCUAGAUAGUAGAGCGCCAAGGCAACGCAUUUGUCCAGGGAAAUUUCGAGCGAGCUUUUGCUUGCG-
....((((((.(((((........(((((...)))))..(((((((...((((......)))).))))((....))...)))))))))))))).........((((((....)))))).- ( -39.40)
>consensus
UUGGACGGGGCAGAGAAAAUCUCUCGGCAAUCAGAGAUAGCCGCUCGCCGCUGGCCAGGAAGUUCAGCGCCAGAGCCACACACUUGUCGGUAGAAAUUGCUGGCUCUCUUUGA_GUCAGU
..(((.(((((.(((.....(((((..........)))))...))))))....(((((..........((....))..........((....)).....))))))))))........... (-16.08 = -14.16 +  -1.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:19 2006