Locus 405

Sequence ID 3L_DroMel_CAF1
Location 1,191,666 – 1,191,782
Length 116
Max. P 0.805625
window591

overview

Window 1

Location 1,191,666 – 1,191,782
Length 116
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 94.92
Mean single sequence MFE -35.35
Consensus MFE -32.26
Energy contribution -32.70
Covariance contribution 0.44
Combinations/Pair 1.09
Mean z-score -1.73
Structure conservation index 0.91
SVM decision value 0.63
SVM RNA-class probability 0.805625
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1191666 116 + 23771897
AUGAGGCUCAUUUCUAAUGGGGCAUGGGGCAUUUCCACAUUCUUGUAA----CUAAUCACAGUUUGUGGUUGUGCUCUGAGAAUCGAAGAUUCCCUCGGGCGCCUGACAGUCUUCAUUAA
..((..(((.(..(....)..)...(((((((..(((((..((.((..----......))))..)))))..))))))))))..))(((((((...((((....)))).)))))))..... ( -37.00)
>DroSec_CAF1 7311 116 + 1
AUGAGGCUCAUUUCUAAUGGGGCAUGGGGCAUUUCCACAUUCUUGUAA----CUAAUCACAGUUUGUGGUCGUGCUCUGAGAAUCGAAGAUUCCCUCGGGCGCCUGACAGUCUUUAUUAA
..((..(((.(..(....)..)...(((((((..(((((..((.((..----......))))..)))))..))))))))))..))(((((((...((((....)))).)))))))..... ( -33.60)
>DroSim_CAF1 6695 116 + 1
AUGAGGCUCAUUUCUAAUGGGGCAUGGGGCAUUUCCACAUUCUUGUAA----CUAAUCACAGUUUGUGGUCGUGCUCUGAGAAUCGAAGAUUCCCUCGGGCGCCUGACAGUCUUCAUUAA
..((..(((.(..(....)..)...(((((((..(((((..((.((..----......))))..)))))..))))))))))..))(((((((...((((....)))).)))))))..... ( -36.20)
>DroYak_CAF1 6723 117 + 1
AUGAGGCUCAUUUCUAAUGGGGCAUGGGA---UUCCACAUUCUUGUAACCAACUAAUCACAGUUUGUGGUCGUGCUCCGAGAAUCGAAGAUUCCCUCAGGCGCCUGACAGUCUUCAUUAA
..((..(((((.....))(((((((((..---..(((((..((.((............))))..)))))))))))))))))..))(((((((...((((....)))).)))))))..... ( -34.60)
>consensus
AUGAGGCUCAUUUCUAAUGGGGCAUGGGGCAUUUCCACAUUCUUGUAA____CUAAUCACAGUUUGUGGUCGUGCUCUGAGAAUCGAAGAUUCCCUCGGGCGCCUGACAGUCUUCAUUAA
..((..(((.(..(....)..)...(((((((..(((((..((.((............))))..)))))..))))))))))..))(((((((...((((....)))).)))))))..... (-32.26 = -32.70 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:02 2006