Locus 4048

Sequence ID 3L_DroMel_CAF1
Location 11,797,128 – 11,797,246
Length 118
Max. P 0.587040
window6304

overview

Window 4

Location 11,797,128 – 11,797,246
Length 118
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 87.29
Mean single sequence MFE -31.80
Consensus MFE -25.68
Energy contribution -25.80
Covariance contribution 0.12
Combinations/Pair 1.04
Mean z-score -1.49
Structure conservation index 0.81
SVM decision value 0.11
SVM RNA-class probability 0.587040
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11797128 118 - 23771897
CUGCAGUUCCACCGUCUCGAGGAAGCCGCGCUUCUUCUUCGCCGAAGCCUCCAGGAGUCCAUUGACGCCCUCAUACAGCGUAUCACGCGAAACCUUCGACCUGCAAGAUUGAACCAAU
.(((((.((.........((((((((...))))))))(((((.((..((....))..)).....((((.........)))).....)))))......)).)))))............. ( -30.20)
>DroPse_CAF1 10698 118 - 1
UUGCAACUCCACCGUCUCGAGGAAGCCACGCUUCUUCUUCAGCGAGUUCUCCAGAAUUCCACUGACGCCCUCAUAGAGCGUGUCACGCGAAACUUUCGAUCUGAAACACAAAGUAAAU
((((.........((.((((((((((...))))))))....((((((((....))))))...((((((.(((...))).)))))).)))).))((((.....))))......)))).. ( -29.90)
>DroSec_CAF1 6666 118 - 1
CUGCAGUUCCACCGUCUCGAGGAAGCCGCGCUUCUUCUUGGCCGAAGCCUCCAGGAGUCCAUUGACGCCCUCAUACAGCGUAUCACGCGAAACCUUCGACCUGCAAGAUUCAACCAAU
.(((((.......(((..((((((((...))))))))..)))(((((.....(((.(((....)))..)))......(((.....))).....)))))..)))))............. ( -33.00)
>DroSim_CAF1 6262 118 - 1
CUGCAGUUCCACCGUCUCGAGGAAGCCGCGCUUCUUCUUGGCCGAAGCCUCCAGGAGUCCAUUGACGCCCUCAUACAGCGUAUCACGCGAAACCUUCGACCUGCAAGAUUCAACCAAU
.(((((.......(((..((((((((...))))))))..)))(((((.....(((.(((....)))..)))......(((.....))).....)))))..)))))............. ( -33.00)
>DroPer_CAF1 11215 118 - 1
UUGCAACUCCACCGUCUCGAGGAAGCCACGCUUCUUCUUCAGCGAGUUCUCCAGAAUUCCACUGACGCCCUCAUAGAGCGUGUCACGCGAAACUUUCGAUCUGCAACACAAAGUAAAU
(((((..((....((.((((((((((...))))))))....((((((((....))))))...((((((.(((...))).)))))).)))).))....))..)))))............ ( -32.90)
>consensus
CUGCAGUUCCACCGUCUCGAGGAAGCCGCGCUUCUUCUUCGCCGAAGCCUCCAGGAGUCCAUUGACGCCCUCAUACAGCGUAUCACGCGAAACCUUCGACCUGCAAGAUUAAACCAAU
.(((((.((...((((..((((((((...))))))))......((..((....))..))....))))..........(((.....))).........)).)))))............. (-25.68 = -25.80 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:15 2006