| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,784,352 – 11,784,456 |
| Length | 104 |
| Max. P | 0.936995 |
| Location | 11,784,352 – 11,784,456 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 77.56 |
| Mean single sequence MFE | -25.34 |
| Consensus MFE | -18.69 |
| Energy contribution | -19.75 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.74 |
| SVM decision value | 1.26 |
| SVM RNA-class probability | 0.936995 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11784352 104 - 23771897 UUUCGAUUACA-AUUACUAUAGAUAGUUGUGGAGGAACCUUCACAGCCCGAUUUGGCUACAUCAAAUCACCAAAUUGGCCAAAGAACUAUGGGGAAUCUCAAAUG ....((((.(.-....((((((...(((((((((....)))))))))(((((((((.............)))))))))........)))))).)))))....... ( -29.32) >DroGri_CAF1 8659 100 - 1 CCGCGAUUA-UA-UUUCAAUAGU---UUGUGGCGGAAGCUCUGCAGCUCGAUACGGAACUAUUCAAUCACCAAAUUGGCCACAAAAAUAUGGCAGAUUAGAAAAU .........-..-((((((((((---(((((.((..((((....)))))).))).)))))))).........((((.((((........)))).)))).)))).. ( -18.70) >DroSec_CAF1 4503 103 - 1 UUUAAAUUA-A-AUUACUAUAGAUAGUUGUGGAGGAACCUUCACAGGCCGCUUUGGCUACAUCAAAUCACCAAAUUGGCCGAAGAACUAUGGGGAAUUUCAAACG ........(-(-(((.((((((.....(((((((....)))))))(((((.(((((.............))))).)))))......))))))..)))))...... ( -29.22) >DroSim_CAF1 4491 103 - 1 UUUAAAUUA-A-AUUACUAUAGAUAGUUGUGGAGGAACCUUCACAGGCCGCUUUGGCUACAUCAAAUCACCAAAUUGGCCGAAGAACUAUGGAGAUUUUCAAACG ........(-(-(((.((((((.....(((((((....)))))))(((((.(((((.............))))).)))))......)))))).)))))....... ( -29.72) >DroEre_CAF1 4612 103 - 1 UUUGAUUCC-A-AUUACUAUAGAUAGUUGUGGAGGAACCUUCACUGGCCGCUCUGGCUACAUCAAAUCUCCAAAUUGGCCAAAGAACUAUGGAGAAUCCGAAACA ...(((((.-.-....((((((......((((((....))))))((((((.(.(((.............))).).)))))).....)))))).)))))....... ( -24.82) >DroYak_CAF1 4517 103 - 1 UUUGAUUGA-A-UUUACGAUAGAGAGCUGCGGAGGAACCUUCACUGGUCGCUUUGGCUACAUCAAAACACCAAACUGGCCCAAGAACUAUGGGGAGUCCCAAACA ..((.(((.-(-((..(.((((.((.(.(.((((....)))).).).)).(((.(((((................))))).)))..)))).)..)))..))).)) ( -20.29) >consensus UUUAAAUUA_A_AUUACUAUAGAUAGUUGUGGAGGAACCUUCACAGGCCGCUUUGGCUACAUCAAAUCACCAAAUUGGCCAAAGAACUAUGGGGAAUCUCAAACG ................((((((......((((((....)))))).(((((.(((((.............))))).)))))......))))))............. (-18.69 = -19.75 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:03 2006