Locus 4023

Sequence ID 3L_DroMel_CAF1
Location 11,734,116 – 11,734,207
Length 91
Max. P 0.947373
window6268

overview

Window 8

Location 11,734,116 – 11,734,207
Length 91
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 75.09
Mean single sequence MFE -24.06
Consensus MFE -10.02
Energy contribution -12.40
Covariance contribution 2.38
Combinations/Pair 1.10
Mean z-score -2.47
Structure conservation index 0.42
SVM decision value 1.37
SVM RNA-class probability 0.947373
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11734116 91 - 23771897
GAAAGU--------AUCAAAGCAGUGGAAAAUUAAUUUCCACGACCAUUAUCCAAUAUCAUUCGUUGGCCGCAAGCUGUUGCCAAUUGCUUUGGCAAUU
......--------.(((((((((((((((.....))))))).....................((((((.((.....)).))))))))))))))..... ( -26.20)
>DroSec_CAF1 47003 91 - 1
GAAAGU--------GUCAAAGCAGUUGAAAAUUAAUUUCCCCGACCAUUAUCCAAUAUCAUCCGUUGGCCGCAAGCUGUUGCCAAUUGCUUUGGCAAUU
.....(--------(((((((((((((.............(((((..................)))))..((((....))))))))))))))))))... ( -24.67)
>DroSim_CAF1 42066 91 - 1
UAAAGU--------GUCAAAGCAGUGGAAAAUUAAUUUCCCCAACCAUUAUCCAAUAUCAUUCGUUGGCCGCAAGCUGUUGCCAAUUGCUUUGGCAAUU
.....(--------((((((((((.(((((.....))))).).....................((((((.((.....)).))))))))))))))))... ( -26.20)
>DroEre_CAF1 43236 99 - 1
GAAAGUACAGAAUUGUCAUAGCAGUGGAGAAUUAAUUUCACCGACCAUUAUCCAUUAUCAUCCGUUGGCCGCAAGCUGUUGCCAAAUGCUUUGGCAAUU
..........((((((((.((((.(((.(((.....))).))).....................(((((.((.....)).))))).)))).)))))))) ( -24.50)
>DroYak_CAF1 44138 99 - 1
GAAAAUACAGAAUUGCCAUAGCAGUGGGAAAUUAAUUUCACUGACCAUUAUCCAUUAUCGCCCGUUGGCCGCAAGCUGUUGCCAAUUGCUUUGGCAAUU
..........((((((((.(((((((..(......)..)))).....................((((((.((.....)).)))))).))).)))))))) ( -28.70)
>DroAna_CAF1 38436 71 - 1
GGCAGG--------AUUGCAGGACUC-----UAAAAUCCUCUAACGAUUAUCCAUUAUUUUUC----ACUGCAAGCUGUUGCCAG-----------AUU
(((((.--------.((((((((...-----........((....))..............))----.))))))....)))))..-----------... ( -14.11)
>consensus
GAAAGU________GUCAAAGCAGUGGAAAAUUAAUUUCCCCGACCAUUAUCCAAUAUCAUCCGUUGGCCGCAAGCUGUUGCCAAUUGCUUUGGCAAUU
..............((((.((((((((.................)))))..............((((((.((.....)).)))))).))).)))).... (-10.02 = -12.40 +   2.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:39 2006