| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,729,090 – 11,729,199 |
| Length | 109 |
| Max. P | 0.918330 |
| Location | 11,729,090 – 11,729,199 |
|---|---|
| Length | 109 |
| Sequences | 3 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 87.58 |
| Mean single sequence MFE | -33.83 |
| Consensus MFE | -24.40 |
| Energy contribution | -25.07 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.44 |
| Structure conservation index | 0.72 |
| SVM decision value | 1.12 |
| SVM RNA-class probability | 0.918330 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11729090 109 + 23771897 UCGUGGAUAAUUUCACAAAACCAAUUCGCAGCGAAC---GAAUUCAUUGUUCGCUAUUUUUGGGGGUUCGGUGCUAAAAUGCUCCAAUGCUCCAGAUUGCUCCAAUGUUUCA ..(((((....)))))...........(((((((((---((.....)))))))))...((((((((((.((.((......)).))))).)))))))..))............ ( -31.00) >DroSec_CAF1 41988 97 + 1 UCGUGGACAAUUUCACAAAACCAAUUCGCAGCGAAC---GAAUUCAUUGUUCGCUGUU--UGGGGCUUCGGUGCUAAAAUGCUCCAGUGC----------UCCAAUGCUUCA ..(((((....)))))...........(((((((((---((.....)))))))))))(--((((((...((.((......)).))...))----------)))))....... ( -34.90) >DroSim_CAF1 37074 101 + 1 UCGUGGACAAUUUCACAAAACCAAUUCGCAGCGAACGACGAAUUCAUUGUUCGCUGUU-UUGGGGCUUCGGUGCUAAAAUGCUCCAGUGC----------UCCAAUGCUUCA ..(((((....)))))...........(((((((((((.(....).))))))))))).-(((((((...((.((......)).))...))----------)))))....... ( -35.60) >consensus UCGUGGACAAUUUCACAAAACCAAUUCGCAGCGAAC___GAAUUCAUUGUUCGCUGUU_UUGGGGCUUCGGUGCUAAAAUGCUCCAGUGC__________UCCAAUGCUUCA ..(((((....)))))....((((...(((((((((...(....)...)))))))))..))))......((.((......)).))........................... (-24.40 = -25.07 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:36 2006