Locus 4014

Sequence ID 3L_DroMel_CAF1
Location 11,716,386 – 11,716,485
Length 99
Max. P 0.541466
window6254

overview

Window 4

Location 11,716,386 – 11,716,485
Length 99
Sequences 4
Columns 101
Reading direction reverse
Mean pairwise identity 87.58
Mean single sequence MFE -23.90
Consensus MFE -14.86
Energy contribution -14.42
Covariance contribution -0.44
Combinations/Pair 1.20
Mean z-score -2.16
Structure conservation index 0.62
SVM decision value 0.02
SVM RNA-class probability 0.541466
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11716386 99 - 23771897
AUCAUUUGCUAGCGUGUAGGUGUGUGUAUAAAAACAUGAAUAGCCUAAUAUACAUGCACUGCGCUAAAA--AAAAGUUGUUGCCCAAAUGUGCAGAAAAAA
....(((((((((((...((((((((((((..................))))))))))))))))))...--.....(((.....)))....)))))..... ( -22.57)
>DroSim_CAF1 25376 101 - 1
AUCAUUUGCUGGCGCGUAGGUGUGUGUAUAAAAACAUGAAUAGCCUAAUAUACAUGCACUGCGCUAAAAAAAAAAGUUGUUGCCGAAAUGUGCAGAAAAAA
....(((((((((((...((((((((((((..................)))))))))))))))))).........((....))........)))))..... ( -23.47)
>DroEre_CAF1 25598 95 - 1
AUCAUUUGCUGGC--GUAGGUGUGUAUAUGGAAACAUGAAUAGCCUAAUAUACGUGCACUGCGCUGAA----AAAGUGCCUGCCCAAAUGUGCCGAAAAAA
....(((..((((--((((((.(((.((((....)))).))))))))......(.(((..(((((...----..))))).))).).....)))))..))). ( -26.40)
>DroYak_CAF1 25621 95 - 1
AUCAUUUGCUGGC--GUAGGUGGGUAUGUAAAAACAUGAAUAGCCUAAUAUACAUGCACUGCGCUAAA----AAAGUUGUAUCGCAAAUGUGCUGAAAAAA
..(((((((((((--((((....(((((((....................))))))).))))))))..----...(......))))))))........... ( -23.15)
>consensus
AUCAUUUGCUGGC__GUAGGUGUGUAUAUAAAAACAUGAAUAGCCUAAUAUACAUGCACUGCGCUAAA____AAAGUUGUUGCCCAAAUGUGCAGAAAAAA
..((((((.((((..((((((((((((((..................)))))))))).)))))))).........(......).))))))........... (-14.86 = -14.42 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:26 2006