| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,636,909 – 11,637,005 |
| Length | 96 |
| Max. P | 0.579135 |
| Location | 11,636,909 – 11,637,005 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 67.93 |
| Mean single sequence MFE | -32.33 |
| Consensus MFE | -13.29 |
| Energy contribution | -12.35 |
| Covariance contribution | -0.94 |
| Combinations/Pair | 1.45 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.41 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.579135 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11636909 96 + 23771897 UACAGCACCGACGCCCCCUCCACCCCACCCUUCAAAAAAAGGGGAUGGGCUUUAUCAAUUUUAGGGUCUCGGGCGGACAGCUGGCGGAUG-CUGA----UG ..((((((((..((....(((.(((..(((((......)))))...((((((((.......)))))))).))).)))..))...))).))-))).----.. ( -34.90) >DroSec_CAF1 11470 83 + 1 UACAGCAUCGAC--CCCCUCC---------CCC--AAAAAGGGGAGGAGCUUUAUCAAUUUUAGGGUCUCGGGCGGACAGCUGGCGGAUG-CUGC----UG ..((((((((((--(((((((---------((.--.....))))))).(......).......))))).(.(((.....))).)..))))-))).----.. ( -35.60) >DroSim_CAF1 11708 83 + 1 UGCAGCAUCGAC--CCCAUCC---------CCC--AAAAAGGGGAGGAGCUUUAUCAAUUUUAGGGUCUCGGGCGGACAGCUGUCGGAUG-CUGC----UG .(((((((((((--((..(((---------((.--.....))))).((......)).......)))))...(((((....))))).))))-))))----.. ( -37.20) >DroAna_CAF1 9023 86 + 1 UACAGUGCCUGC--CACAGCC---------AGC--UGCAAGUUGGUUAGAUUUAUCAAUUUCAGGACUGCGAGGGGA--ACUGAAGACUGUCUGCCACCCA ..((((.((((.--...((((---------(((--.....))))))).((....)).....))))))))...(((..--...((......)).....))). ( -21.60) >consensus UACAGCACCGAC__CCCAUCC_________CCC__AAAAAGGGGAGGAGCUUUAUCAAUUUUAGGGUCUCGGGCGGACAGCUGGCGGAUG_CUGC____UG ..((((.(((....(((.............(((.......)))..(((((((((.......)))))))))))))))...)))).................. (-13.29 = -12.35 + -0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:00 2006