Locus 3976

Sequence ID 3L_DroMel_CAF1
Location 11,566,653 – 11,566,753
Length 100
Max. P 0.993967
window6195

overview

Window 5

Location 11,566,653 – 11,566,753
Length 100
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 95.63
Mean single sequence MFE -33.72
Consensus MFE -33.72
Energy contribution -33.72
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.60
Structure conservation index 1.00
SVM decision value 2.44
SVM RNA-class probability 0.993967
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11566653 100 + 23771897
GCUGCCUGCCGUGUGCCACUUUGGCCAUGUUCGUGGCCGUGGCCGUGGCCUCGACUCAUGCGCUCGUUUUCGUUUCCCUGCAGCUUUUCCA-ACACAACUC
(((((..((((((.(((((...((((((....)))))))))))))))))..(((.....((....))..))).......))))).......-......... ( -33.80)
>DroSec_CAF1 62172 101 + 1
GCUGCCUGCCGUGUGCCACUUUGGCCAUGUUCGUGGCCGUGGCCGUGGCCUCGACUCAUGCGCUCGUUCUCGUUUCCCUGCAGCUUUCCCAAACACAACUC
(((((..((((((.(((((...((((((....)))))))))))))))))..(((.....((....))..))).......)))))................. ( -33.80)
>DroSim_CAF1 63813 101 + 1
GCUGCCUGCCGUGUGCCACUUUGGCCAUGUUCGUGGCCGUGGCCGUGGCCUCGACUCAUGCGCUCGUUCUCGUUUCCCUGCAGCUUUCCCAAACACAACUC
(((((..((((((.(((((...((((((....)))))))))))))))))..(((.....((....))..))).......)))))................. ( -33.80)
>DroEre_CAF1 52993 99 + 1
GCUGCCUGCCGUGUGCCACUUUGGCCAUGUUCGUGGCCGUGGCCGUGGCCUCGACUCAUGCGCUCGUUCUCGUUUCCCUGCAGCCUCAC--AACUCAACUC
(((((..((((((.(((((...((((((....)))))))))))))))))..(((.....((....))..))).......))))).....--.......... ( -33.40)
>DroYak_CAF1 67891 99 + 1
GCUGCCUGCCGUGUGCCACUUUGGCCAUGUUCGUGGCCGUGGCCGUGGCCUCGACUCAUGCGCUCGUUCUCGUUUCCCUGCAGCUUCAC--AACUCAACUC
(((((..((((((.(((((...((((((....)))))))))))))))))..(((.....((....))..))).......))))).....--.......... ( -33.80)
>consensus
GCUGCCUGCCGUGUGCCACUUUGGCCAUGUUCGUGGCCGUGGCCGUGGCCUCGACUCAUGCGCUCGUUCUCGUUUCCCUGCAGCUUUACCAAACACAACUC
(((((..((((((.(((((...((((((....)))))))))))))))))..(((.....((....))..))).......)))))................. (-33.72 = -33.72 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:29 2006