Locus 3975

Sequence ID 3L_DroMel_CAF1
Location 11,563,821 – 11,563,933
Length 112
Max. P 0.500000
window6194

overview

Window 4

Location 11,563,821 – 11,563,933
Length 112
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 84.09
Mean single sequence MFE -37.57
Consensus MFE -33.08
Energy contribution -33.53
Covariance contribution 0.45
Combinations/Pair 1.13
Mean z-score -1.07
Structure conservation index 0.88
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11563821 112 - 23771897
--------AAGAUGUUUAACCGCUGCGGUUCUUCUUCCUGCGGAUCGUCUUGACCUUCUUGGGGCGGUGCACCUUGCGCUUGUAGUGGAUCACGUGCUUCUUCUUGGAGGAGGAGGGCGA
--------...........(((((((((........)).((..(((((((..(.....)..)))))))((.....))))..)))))))....(((.(((((((.....))))))).))). ( -38.40)
>DroSim_CAF1 60705 111 - 1
---------AGAUCCUUAACCGCUGCGGUUCUUCUUCUUGUGGAUCGUCUUGACCUUCUUGGGGCGGUGCACCUUGCGCUUGUAGUGGAUCGUGUGCUUCUUCUUCUUGGAAGAGGACGC
---------.(((((...(((((((((((((..........))))))).....((.....))))))))((.....)).........)))))((((.((((((((....)))))))))))) ( -39.10)
>DroYak_CAF1 63457 120 - 1
CUAUAGUUAAGAUGGUUAACCGCUGCGGUUCUUCUUCCUGUGGAUCUUCUUGACCUUCUUGGGCUUGUGCACCUUGCGUUUGUAGUGGACCACGUGCUUCUUCUUUUUGGAGGAGGACGA
............((((...(((((((((((.....(((...))).......)))).....((((....)).))........)))))))))))(((.(((((((.....))))))).))). ( -35.20)
>consensus
________AAGAUGCUUAACCGCUGCGGUUCUUCUUCCUGUGGAUCGUCUUGACCUUCUUGGGGCGGUGCACCUUGCGCUUGUAGUGGAUCACGUGCUUCUUCUUCUUGGAGGAGGACGA
...................(((((((((........)).(((.(((((((..(.....)..))))))).))).........)))))))....(((.((((((((....))))))))))). (-33.08 = -33.53 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:28 2006