Locus 3973

Sequence ID 3L_DroMel_CAF1
Location 11,552,502 – 11,552,620
Length 118
Max. P 0.714028
window6192

overview

Window 2

Location 11,552,502 – 11,552,620
Length 118
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 78.01
Mean single sequence MFE -19.18
Consensus MFE -9.06
Energy contribution -13.06
Covariance contribution 4.00
Combinations/Pair 1.09
Mean z-score -2.51
Structure conservation index 0.47
SVM decision value 0.38
SVM RNA-class probability 0.714028
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11552502 118 - 23771897
GGAACUGAACAGAUAUCUAUAAAAGCAUAAUCUCAAUUCAGUAAACCACUACACUUUCUUGCACCACCGCGAUAAGGUUUUGAAUCCAUUAUCAGUUCCCAAUAUUUCCAACAUAA--CA
((((((((..((((((((.....)).)).))))..((((((((......)))(((((.((((......)))).)))))..)))))......)))))))).................--.. ( -20.90)
>DroSec_CAF1 49858 118 - 1
GGAACUGAACAGAUAACUAUAAAAGCAUAAUCUCAAUCCAGUAAAUCACUACACUUGCUUGCACCACCGCGAUAAGAUUUUUAUUCCAUUAUCAGUUCCCGAUAUUUCCAACAAAG--CA
((((((((...(((....(((((((...............(((......))).((((.((((......)))))))).)))))))...))).)))))))).................--.. ( -18.40)
>DroSim_CAF1 49424 118 - 1
GGAACUGAACAGAUUACUAUAAAAGCCUAAUCGCAAUUCACUAAAUCACUACACUUGCUUGCACCACCGCGAUAAGGUUUUGAUUCCAUUAUCAGUUCCCAAUAUUUCCAACAAAA--CA
((((((((...(((((((.....))..)))))...........(((((..((.((((.((((......))))))))))..)))))......)))))))).................--.. ( -23.80)
>DroYak_CAF1 50186 108 - 1
GGAACUCAGUAGGUACAUAUAAAAGCCUAAUCGUAACACUCUCAAUCACAACACUUCCGUUCACCACUUUGAUAAGGCUUUUAUUUCA------------AAUAACCCCAACCAAAUUCA
((.(((.....)))....((((((((((.((((....................................)))).))))))))))....------------...........))....... ( -13.62)
>consensus
GGAACUGAACAGAUAACUAUAAAAGCAUAAUCGCAAUUCACUAAAUCACUACACUUGCUUGCACCACCGCGAUAAGGUUUUGAUUCCAUUAUCAGUUCCCAAUAUUUCCAACAAAA__CA
((((((((..........((((((((((.(((((..................................))))).)))))))))).......))))))))..................... ( -9.06 = -13.06 +   4.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:26 2006