| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,425,722 – 11,425,816 |
| Length | 94 |
| Max. P | 0.814559 |
| Location | 11,425,722 – 11,425,816 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 89.55 |
| Mean single sequence MFE | -26.55 |
| Consensus MFE | -21.81 |
| Energy contribution | -21.20 |
| Covariance contribution | -0.61 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.814559 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11425722 94 + 23771897 AAGCGGACAACAUGGAUGGGGAAACGCAUCGCUUUAUGGGGUCGUUAAAAGGUCCAGGGACAUAAAACCCAUGAAGGAAAUUAAGUUUUGCGAG ..((((((......((((.(....).)))).(((((((((....(((....(((....))).)))..)))))))))........).)))))... ( -29.30) >DroSec_CAF1 145439 94 + 1 AAGCGGACAACAUGGAUGGGGAAACGCAUCGCUUUAUGGGGUCGUUAAAAGGUCCAGGGACAUAAAACCCAUGAAGGAAAUUAAGUUUUGCGAG ..((((((......((((.(....).)))).(((((((((....(((....(((....))).)))..)))))))))........).)))))... ( -29.30) >DroSim_CAF1 157027 94 + 1 AAGCGGACAACAUGGAUGGGGAAACGCAUCGCUUUAUGGGGUCGUUAAAAGGUCCAGGGACAUAAAACCCAUGAGGGAAAUUAAGUUUUGCGAG ..((((((......((((.(....).)))).(((((((((....(((....(((....))).)))..)))))))))........).)))))... ( -29.00) >DroEre_CAF1 153031 87 + 1 -------CAGCUUGGAUGGGCAAACGCGUCGCUUUAUGGGGUCGUUAAAAGGUCCAGGGACAUAAAACCCAUGAAGGAAAUUAAGUUUUGCGAG -------.((((((((((.(....).)))).(((((((((....(((....(((....))).)))..))))))))).....))))))....... ( -23.30) >DroYak_CAF1 143928 87 + 1 -------CAACAUGGAUGGGCAAACGCGUCGCUUUAUGGGGUCGUUAAAAGGUCCAGGGACAUAAAACCCAUGGAGGAAAUUAAGUUUUGCGAG -------............(((((.((.((.(((((((((....(((....(((....))).)))..)))))))))))......)))))))... ( -21.40) >DroAna_CAF1 136200 90 + 1 A---GGACAGC-CAAAUGGGCAAACGCACCGCUUUAUGGGGUCGUUAAAAGGUCCAGGGACAUAAAAUCCAUGGAGGAAAUUAAGUUCUGCACG .---((((.((-(.....))).((((.(((.(.....).))))))).....)))).(((((.(((..(((.....)))..))).)))))..... ( -27.00) >consensus A___GGACAACAUGGAUGGGCAAACGCAUCGCUUUAUGGGGUCGUUAAAAGGUCCAGGGACAUAAAACCCAUGAAGGAAAUUAAGUUUUGCGAG ........(((...((((.(....).)))).(((((((((....(((....(((....))).)))..)))))))))........)))....... (-21.81 = -21.20 + -0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:31 2006