Locus 3925

Sequence ID 3L_DroMel_CAF1
Location 11,382,097 – 11,382,189
Length 92
Max. P 0.510135
window6112

overview

Window 2

Location 11,382,097 – 11,382,189
Length 92
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 92.20
Mean single sequence MFE -23.70
Consensus MFE -19.46
Energy contribution -19.50
Covariance contribution 0.04
Combinations/Pair 1.11
Mean z-score -1.29
Structure conservation index 0.82
SVM decision value -0.05
SVM RNA-class probability 0.510135
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11382097 92 - 23771897
CGCCAUUCAAAACAAGGAAAAAUUAUGAUAAGUGGUUGCCAGUUGGAGGCAAUGUAUCAACUGCCAUCUGGCGGAAAAGCUGAGCUAAGUAG----
.(((.(((((.....((...((((((.....)))))).))..))))))))..........(((((....)))))....(((......)))..---- ( -21.10)
>DroSec_CAF1 102057 96 - 1
CGCCAUCCAAAACAAGGAAAAAUUAUGAUAAGUGGUUGCCAGUUGGAGGCAAUGCAUCAACUGCCAUCUGGCGCAAAAGCUGAGCUAAGUAGUCAG
.(((.(((((.....((...((((((.....)))))).))..))))))))...((.(((...(((....)))((....)))))))........... ( -23.50)
>DroSim_CAF1 114534 92 - 1
CGCCAUCCAAAACAAGGAAAAAUUAUGAUAAGUGGUUGCCAGUUGGAGGCAAUGCAUCAACUGCCAUCUGGCGGAAAAGCUGAGCUAAGUAG----
.(((.(((((.....((...((((((.....)))))).))..))))))))..(((.....(((((....)))))...(((...)))..))).---- ( -24.60)
>DroEre_CAF1 108767 92 - 1
CGCCAGCUAAAAGCUGGGAAAAUUAUGAUAAGUGGUUGCCAGUUGGAGGCAAUGCAUCAACUGCCAUCUGGCGGAAAAGCUGAGCUAAGUAG----
.(((((((...((((((...((((((.....)))))).)))))).((.((...)).))..(((((....)))))...))))).)).......---- ( -27.50)
>DroYak_CAF1 97477 92 - 1
CGCCUUCUAAAAACAGGGAAAAUUAUGAUAAGUGCUUGCCAGUUGGAGGCAAUGCAUCAACUGCCAUCUGGCGGAAAAGCAGAGCUAAGUAG----
.((((.((.......................(((((((((.......))))).))))...(((((....)))))...)).)).)).......---- ( -21.80)
>consensus
CGCCAUCCAAAACAAGGAAAAAUUAUGAUAAGUGGUUGCCAGUUGGAGGCAAUGCAUCAACUGCCAUCUGGCGGAAAAGCUGAGCUAAGUAG____
.(((.(((((.....((...((((((.....)))))).))..))))))))..(((.....(((((....)))))...(((...)))..)))..... (-19.46 = -19.50 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:10 2006