Locus 3921

Sequence ID 3L_DroMel_CAF1
Location 11,371,394 – 11,371,496
Length 102
Max. P 0.571587
window6106

overview

Window 6

Location 11,371,394 – 11,371,496
Length 102
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 83.70
Mean single sequence MFE -30.10
Consensus MFE -19.53
Energy contribution -20.53
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -2.33
Structure conservation index 0.65
SVM decision value 0.08
SVM RNA-class probability 0.571587
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11371394 102 + 23771897
UGGCCAUUG------CCGUUGCCAAUUUCCGGAAAAUGGCAAUGGGCAUCACGAGCAGCAGAAGCGCCGGCCGUUGGGCGUAAAUUAAAAUUAAAUUCAAAUGGAAAA
((.((((((------(((((.((.......))..))))))))))).))((.((.((.((....))))))(((....)))........................))... ( -30.10)
>DroPse_CAF1 103649 96 + 1
UGGCCAGAGCAGAGCCCGUUGCCAAUUUCCGGCAAAUGGCAUUGGGCAGCGGGAA------------AGGCCGUUGGGCGUAAAUUAAAAUUAAAUUCAAAUGGAAAA
.(.((((.((....(((((((((.....(((.....))).....)))))))))..------------..))..)))).)............................. ( -30.20)
>DroSec_CAF1 91687 102 + 1
UGGCCAUUG------CCGUUGCCAAUUUCCGGAAAAUGGCAAUGGGCAUCACGAGCAGCUGAAGCGCCGGCCGUUGGGCGUAAAUUAAAAUUAAAUUCAAAUGGAAAA
((.((((((------(((((.((.......))..))))))))))).))((.((.((.((....))))))(((....)))........................))... ( -30.30)
>DroYak_CAF1 86492 102 + 1
UGGCCAUUG------CCGUUGCCAAUUUCCGGAAAAUGGCAAUGGGCAUCACGAGCAGCAGAAGCGUCGGCCGUUGGGCGUAAAUUAAAAUUAAAUUCAAAUGGAAAA
((.((((((------(((((.((.......))..))))))))))).))((.(((((.......)).)))(((....)))........................))... ( -29.00)
>DroAna_CAF1 83204 91 + 1
UGGCCAUUG------CCGUUGCCAAUUUCCGGCAAAUGGCAAUGGGCA----GAGCUCCA-------CUGCCGUUGGGCGUAAAUUAAAAUUAAAUUCAAAUGGAAAA
((.((((((------((((((((.......))).))))))))))).))----..((((.(-------(....)).))))............................. ( -30.80)
>DroPer_CAF1 104855 96 + 1
UGGCCAGAGCAGAGCCCGUUGCCAAUUUCCGGCAAAUGGCAUUGGGCAGCGGGAA------------AGGCCGUUGGGCGUAAAUUAAAAUUAAAUUCAAAUGGAAAA
.(.((((.((....(((((((((.....(((.....))).....)))))))))..------------..))..)))).)............................. ( -30.20)
>consensus
UGGCCAUUG______CCGUUGCCAAUUUCCGGAAAAUGGCAAUGGGCAUCACGAGCAGCA_______CGGCCGUUGGGCGUAAAUUAAAAUUAAAUUCAAAUGGAAAA
...(((((.......(((((((((.((......)).)))))))))........................(((....)))....................))))).... (-19.53 = -20.53 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:04 2006