Locus 3916

Sequence ID 3L_DroMel_CAF1
Location 11,336,027 – 11,336,147
Length 120
Max. P 0.913388
window6096

overview

Window 6

Location 11,336,027 – 11,336,147
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 81.88
Mean single sequence MFE -25.19
Consensus MFE -12.29
Energy contribution -15.37
Covariance contribution 3.08
Combinations/Pair 1.09
Mean z-score -2.76
Structure conservation index 0.49
SVM decision value 1.09
SVM RNA-class probability 0.913388
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11336027 120 + 23771897
UUUUUCUCGAAAUUGAUAUUGAUGAAAUGUAUACCACUCGGUUAUAUAACGUGAGUAGUAUCCAUUUCAGUUUCGCAUUGAAUGAGCCCUAAUUUAAUUUUAAUUCAUUAAUCCUUCAGA
....(((.(((((((((((((((((((((.((((.((((((((....))).))))).)))).))))))).......(((((((........))))))).)))))..))))))..)))))) ( -22.50)
>DroSec_CAF1 56625 112 + 1
UUUUCCUCGAAAUUGAUAUUGAUGAAAUGUAUACCACUCGGUUAUAUAACGUGAGUUGUAUCCAUUUC--------AUUGAAUGUGCCCUAAUUUAAUAUCAAUUCAUUAAUACUUAAUA
........(((.(((((((((((((((((.((((.((((((((....))).))))).)))).))))))--------)))((((........))))))))))))))).............. ( -26.80)
>DroSim_CAF1 64075 112 + 1
UUUUCCUCGAAAUUGAUAUUGAUGAAAUGUAUACCACUCGGUUAUAUAACGUGAGUUGUAUCCAUUUC--------AUUGAAUGUGCCCUAAUUUAAUAUCAAUUCAUUAAUCCUUAAGA
........(((.(((((((((((((((((.((((.((((((((....))).))))).)))).))))))--------)))((((........))))))))))))))).............. ( -26.80)
>DroEre_CAF1 60686 105 + 1
UUUUCCUCGAAACUGAUAUUGAUGCAAUGUAU---------------CACGUGAUUUGUAUCCGUUUCAGUUUCGAAUUGAAUGAGCACUAAUUUAAUAUCAAUUCAUUAAUCCUAUAUU
......((((((((((.((.(((((((...((---------------(....)))))))))).)).))))))))))(((((((........)))))))...................... ( -25.10)
>DroYak_CAF1 49557 120 + 1
UUUUACUCGAAAUUGAUAUUGAUGCAAUGUAUACCACUCGGUUAUAUAGCGUGAAUUGUAUCCGUUUCAGUUUCGAAUUCUAUGAGCACUAAUUUAAUAGCAAUUCAUUAAGCCUGAAUA
........((((((((.((.(((((((((((((((....)).))))).......)))))))).)).))))))))(((((((((.............)))).))))).............. ( -24.73)
>consensus
UUUUCCUCGAAAUUGAUAUUGAUGAAAUGUAUACCACUCGGUUAUAUAACGUGAGUUGUAUCCAUUUCAGUUUCG_AUUGAAUGAGCCCUAAUUUAAUAUCAAUUCAUUAAUCCUUAAUA
........(((.(((((((((((((((((.((((.((((((((....))).))))).)))).)))))))........................))))))))))))).............. (-12.29 = -15.37 +   3.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:55 2006