Locus 3912

Sequence ID 3L_DroMel_CAF1
Location 11,328,126 – 11,328,225
Length 99
Max. P 0.798903
window6091

overview

Window 1

Location 11,328,126 – 11,328,225
Length 99
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 82.11
Mean single sequence MFE -25.48
Consensus MFE -13.02
Energy contribution -13.05
Covariance contribution 0.03
Combinations/Pair 1.05
Mean z-score -3.12
Structure conservation index 0.51
SVM decision value 0.61
SVM RNA-class probability 0.798903
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11328126 99 - 23771897
-------G-CUGCUGUCGCUGUUUGCUCAAUUAAUACGAACUUUAAUUGAAAAACAAUACAAUUAACUAAAUCAGUUAAGCGCGUCGGUCGCCUCGAGUCUGCGAGU
-------(-(.((((.((((((((..((((((((........)))))))).)))))......((((((.....))))))..))).)))).))((((......)))). ( -28.40)
>DroPse_CAF1 60163 81 - 1
-------G-CUGCU---GUUGUUUGCUCAAUUAAUACGAACUUUAAUUGAAAAACAAUACAAUUAACUAAAUCAGUUAAGCGCGUCG--CGACG-------------
-------(-(.(((---(((((((..((((((((........)))))))).))))))))...((((((.....))))))))))....--.....------------- ( -19.10)
>DroGri_CAF1 38693 101 - 1
CCAGUUGGUUUGUUAUGUUUGUUUGCUCAAUUAAAACGAACUUUAAUUGAAAAACAAUGCAAUUAACUAAAUCAGCUAAGCGCGUCGCUGGCGUCGCUUUU------
..((((((((((((((((((((((..(((((((((......))))))))).)))))).)))..)))).)))))))))((((((((.....))).)))))..------ ( -32.50)
>DroSec_CAF1 48784 93 - 1
-------G-CUGCCGUCGCUGUUUGCUCAAUUAAUACGAACUUUAAUUGAAAAACAAUACAAUUAACUAAAUCAGUUAAGCGCGUCGGUCGCCUCGAGUCU------
-------(-(.((((.((((((((..((((((((........)))))))).)))))......((((((.....))))))..))).)))).)).........------ ( -26.90)
>DroSim_CAF1 55954 93 - 1
-------G-CUGCCGUCGCUGUUUGCUCAAUUAAUACGAACUUUAAUUGAAAAACAAUACAAUUAACUAAAUCAGUUAAGCGCGUCGGUCGCCCCGAGUCU------
-------(-(.((((.((((((((..((((((((........)))))))).)))))......((((((.....))))))..))).)))).)).........------ ( -26.90)
>DroPer_CAF1 60472 81 - 1
-------G-CUGCU---GUUGUUUGCUCAAUUAAUACGAACUUUAAUUGAAAAACAAUACAAUUAACUAAAUCAGUUAAGCGCGUCG--CGACG-------------
-------(-(.(((---(((((((..((((((((........)))))))).))))))))...((((((.....))))))))))....--.....------------- ( -19.10)
>consensus
_______G_CUGCUGUCGCUGUUUGCUCAAUUAAUACGAACUUUAAUUGAAAAACAAUACAAUUAACUAAAUCAGUUAAGCGCGUCGGUCGCCUCGAGUCU______
...........((......(((((..((((((((........)))))))).)))))......((((((.....))))))..))........................ (-13.02 = -13.05 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:50 2006