Locus 391

Sequence ID 3L_DroMel_CAF1
Location 1,130,902 – 1,131,018
Length 116
Max. P 0.625057
window574

overview

Window 4

Location 1,130,902 – 1,131,018
Length 116
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 89.99
Mean single sequence MFE -24.88
Consensus MFE -19.73
Energy contribution -19.95
Covariance contribution 0.22
Combinations/Pair 1.09
Mean z-score -2.40
Structure conservation index 0.79
SVM decision value 0.19
SVM RNA-class probability 0.625057
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1130902 116 - 23771897
GAAACACACCGAAAUGUGUUUUU-CACAUUAUUCGCAUGAAUAAUGCAUUGGGCCAAUAUGCAUAUUUUAUGUGAAAUUCGUGCAAUAAAAUACUAUUAAAUAUUUAGUUGCCGCCG---
((((.((((......)))).)))-)......((((((((((..((((((.........))))))..))))))))))...((.(((((.(((((........))))).)))))))...--- ( -29.00)
>DroPse_CAF1 29523 109 - 1
U-------ACGAAAUGUGUUUUU-CACAUUAUUCCCAUGAAUAAUGCAUUCGGCCAAUAUGCAUAUUUUAUGUGAAAUUCGUGCAAUAAAAUACUAUUAAAUAUUUAGUUGCUGCCA---
.-------((((((((((.....-)))))).(((.((((((..((((((.........))))))..)))))).)))..))))(((((.(((((........))))).))))).....--- ( -25.40)
>DroGri_CAF1 16010 108 - 1
C-------GCGAAAUGUGUUUUU-CACAUUAUUU-CAUGAAUAAUGCAUUGGGCUAAUAUGCAUAUUUUAUGUGAAAUUCGUGCAAUAAAAUACUAUUAAAUAUUUAGUUGUUGCCA---
.-------((((((((((.....-))))))((((-((((((((.(((((.........))))))))))...)))))))))))((((((....((((.........))))))))))..--- ( -23.20)
>DroEre_CAF1 22300 109 - 1
C-------GCGAACUGUGUUUUC-CACAUUAUUCGCAUGAAUAAUGCAUUGGGCCAAUAUGCAUAUUUUAUGUGAAAUUCGUGCAAUAAAAUACUAUUAAAUAUUUAGUUGCCGCCG---
.-------(((((.((((.....-))))...((((((((((..((((((.........))))))..)))))))))).)))))(((((.(((((........))))).))))).....--- ( -27.70)
>DroWil_CAF1 6536 113 - 1
C-------GAAAAAUGUGUUUUUCCACAUUAUUUCCAUGAAUAAUGCAUUGGGCCAAUAUGCAUAUUUUAUGUGAAAUUCGUGCAAUAAAAUACUAUUAAAUAUUUAGUUUUUGCCCAAA
.-------((((((((((......)))))).)))).............((((((.....((((((((((....)))))..)))))...(((.((((.........)))).))))))))). ( -22.20)
>DroMoj_CAF1 26758 108 - 1
C-------GCGAAAUGUGUUUUU-CACAUUAUUU-CAUGAAUAAUGCAUUUGGCUAAUAUGCAUAUUUUAUGUGAAAUUCGUGCAAUAAAAUACUAUUAAAUAUUUAGUUGUUGGCA---
(-------((((((((((.....-))))))((((-((((((((.(((((.........))))))))))...))))))))))))(((((....((((.........)))))))))...--- ( -21.80)
>consensus
C_______GCGAAAUGUGUUUUU_CACAUUAUUC_CAUGAAUAAUGCAUUGGGCCAAUAUGCAUAUUUUAUGUGAAAUUCGUGCAAUAAAAUACUAUUAAAUAUUUAGUUGCUGCCA___
........((((((((((......)))))).(((.((((((..((((((.........))))))..)))))).)))..))))(((((.(((((........))))).)))))........ (-19.73 = -19.95 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:45 2006