| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,295,478 – 11,295,596 |
| Length | 118 |
| Max. P | 0.568901 |
| Location | 11,295,478 – 11,295,596 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.02 |
| Mean single sequence MFE | -33.42 |
| Consensus MFE | -24.17 |
| Energy contribution | -23.87 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.568901 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11295478 118 + 23771897 AGAUUUUCAGGAUCGGAGAGUCCGGCGAUCAUUCGCAUCUGACCAAGAUUCAGUUCAGUGGGCUCAUAUCUUAAAGUUCCAUUACGGCCCACUGUUAGAAAAUUUGUGUGAAAAGAUU-- ((((((((.(((((...(.(((..((((....))))....))))..)))))....(((((((((.....................)))))))))...)))))))).............-- ( -32.60) >DroSec_CAF1 19450 118 + 1 AGAUUUUCAGGAUCGGAGAGUCCGGCGAUCCUUCGCAUCUGACCAAGAUUCAGUUUAGUGGGCUCAUAUCUUAAAGUUCCAUUGCGGCCCACUGUUAGAAAAUUCGUGUGAAACGAUU-- ..((((((.(((((...(.(((..((((....))))....))))..)))))....(((((((((((................)).)))))))))...))))))((((.....))))..-- ( -33.19) >DroSim_CAF1 23331 118 + 1 AGAUUUUCAGGAUCGGAGAGUCCGGCGAUCCUUCGCAUCUGACCAAGAUUCAACUUAGUGGGCUCAUAUCUUAAAGUUCCAUUGCGGCCCACUGUUAGAAAAUUCGUAUGAAAAGAUU-- .(((((((.(((((...(.(((..((((....))))....))))..)))))....(((((((((((................)).)))))))))...)))))))..............-- ( -31.29) >DroEre_CAF1 22790 118 + 1 AGAUUUUCAGAGUCAGAGAGUCCGGCGAGAAAUCGCAUCUGACCGAGAUCCAGUUCAGUGGGCUCAUAUCUUAGCGUUCCAUUGCGGCCCACUGCUCGAAAAUUCGUGUGAAAAGAUU-- ...((((((.(((((((.......((((....)))).))))))((((.....(..(((((((((.........(((......))))))))))))..).....))))).))))))....-- ( -37.90) >DroYak_CAF1 10084 118 + 1 AGAUUUUCUGAAUCAGAGAGUCCGGCGAGAAAUCGCAUCUGGCCAAGAUCCAGUUCAGUGGGCUCGUAUCUUAACGUUCCAUUGCGGCCCACUGUUAGAAAAUUCGUAUGAAAAGAUU-- .(((((((((...)))))))))((((((....)))).((((((...((......))(((((((.((((..............))))))))))))))))).....))............-- ( -37.54) >DroAna_CAF1 9890 116 + 1 AGGUCUCCAACGUCAUAGAGAUCGGAAAUCAGUUGCAUCUGUUCUAGGGUCAAUUCCUUGGGCUCAUAUCUCAAAGUACCAUUACGGCCCACUGUACGGACAUCCCUG----ACGAUCCC .((((((..........))))))(((..((((..(..(((((.(..(((((......(((((.......))))).(((....))))))))...).)))))..)..)))----)...))). ( -28.00) >consensus AGAUUUUCAGGAUCAGAGAGUCCGGCGAUCAUUCGCAUCUGACCAAGAUUCAGUUCAGUGGGCUCAUAUCUUAAAGUUCCAUUGCGGCCCACUGUUAGAAAAUUCGUGUGAAAAGAUU__ .(((((((.(.(((...(.(((..((((....))))....))))..))).)....(((((((((.....................)))))))))...)))))))................ (-24.17 = -23.87 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:33 2006