Locus 3891

Sequence ID 3L_DroMel_CAF1
Location 11,262,912 – 11,263,002
Length 90
Max. P 0.740375
window6059

overview

Window 9

Location 11,262,912 – 11,263,002
Length 90
Sequences 4
Columns 90
Reading direction reverse
Mean pairwise identity 67.41
Mean single sequence MFE -23.07
Consensus MFE -11.49
Energy contribution -11.05
Covariance contribution -0.44
Combinations/Pair 1.41
Mean z-score -1.69
Structure conservation index 0.50
SVM decision value 0.45
SVM RNA-class probability 0.740375
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11262912 90 - 23771897
CGGCGGACUGAGUGCCAAUCAUGUGGACGAAUAUGGUGUAUUCGGGGAAUACGUGGCCAUAACCAUACGCAAACUAAAGACGUCCAAGUC
..(((..((((((((..(((((((......))))))))))))))).......((((......)))).)))........(((......))) ( -23.70)
>DroPse_CAF1 45826 87 - 1
---CGGGCUUAGCGCCAACCAUGCGGAUGAGUACGGCGUAUUCGGGGAGUACGUGGCCAUCACAAUCCGCAAANNNNNNNNNNNNNNNNN
---..(((.....))).....(((((((((...(.((((((((...)))))))).)...)))...))))))................... ( -25.20)
>DroSec_CAF1 1462 90 - 1
CGGCGGACUGAGUGCCAAUCAUGUGGACGAAUAUGGUGUAUUCGGGGAAUACGUGGCCAUAACCAUACGCAAACUAAAGACGUCCAAGUC
..(((..((((((((..(((((((......))))))))))))))).......((((......)))).)))........(((......))) ( -23.70)
>DroWil_CAF1 80876 75 - 1
---------------AAGCCAUAUAGAUGAAUAUGGUAUAUUUGGUGAAUAUGUGGCCAUUACCAUAAGGAAACUAAAGACAACCAAAUC
---------------..(((((((......)))))))..(((((((.....(((((......)))))((....)).......))))))). ( -19.70)
>consensus
___CGGACUGAGUGCCAACCAUGUGGACGAAUAUGGUGUAUUCGGGGAAUACGUGGCCAUAACCAUACGCAAACUAAAGACGUCCAAGUC
.............(((((((((((......)))))))((((((...)))))).))))................................. (-11.49 = -11.05 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:19 2006