| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 1,126,390 – 1,126,483 |
| Length | 93 |
| Max. P | 0.725539 |
| Location | 1,126,390 – 1,126,483 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 81.56 |
| Mean single sequence MFE | -38.35 |
| Consensus MFE | -23.99 |
| Energy contribution | -25.49 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.725539 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1126390 93 + 23771897 CGCCAGCUUGGCUGCGGCAGCACUGUGGUAGCCAUUCGUGGUGGUUCCUCCUCCGAUAUAGGUCUGCAAGUAUC--AGAGAAAAGGGGAGAGGGC- ((((((..(((((((.(((....))).)))))))..).)))))..(((((((((........((((.......)--))).....)))).))))).- ( -36.92) >DroPse_CAF1 24427 89 + 1 GGCCAUCUUGGCGGCUGCGGCACUGUGAUACCCAUUGGAAGUGGUGCCGCCGCCGAUGUAGGUCUAAGG-------AGAGGAAGAGAAAGAGCCGC ((((.((((..((((.(((((((..(....((....))..)..))))))).)))).......(((....-------)))....))))..).))).. ( -32.20) >DroSec_CAF1 19878 93 + 1 CGCCAGCUUGGCUGCCGCAGCACUGUGGUAGCCAUUCGUGGUGGUGCCUCCUCCGAUAUAUGUCUGCAAGUAUC--AGAGAAAAGGGGAGAGGCC- ((((((..(((((((((((....)))))))))))..).)))))..((((((((((((((.((....)).)))))--........)))).))))).- ( -44.30) >DroSim_CAF1 16463 92 + 1 CGCCAGCUUGGCUGCCGCAGCACUGUGGUAGCCAUUCGUGGUGGUGCCUCCUCCGAUAUAGGUCUGCAAGUAUC--AGAGAAAAGGGAAGAGGC-- ((((((..(((((((((((....)))))))))))..).)))))..(((((.((((((((..(....)..)))))--.........))).)))))-- ( -40.20) >DroEre_CAF1 17592 93 + 1 GGCCAGCUUGGCUGCCGCAGCACUGUGGUAGCCAUUCGUGGUGGUGCCUCCUCCGAUGUAGGUCUGCUAAUAAC--GGACAAGAGGGUAGAGGCG- .((((.(.(((((((((((....))))))))))).....).))))(((((..((.......(((((.......)--)))).....))..))))).- ( -42.60) >DroYak_CAF1 20415 95 + 1 CGCCAGCUUCGCGGCCGCCGCACUGUGAUAGCCAUUCGUGGUGGUGCCUCCUCCAAUGUAGGUCUGCAAGUAGCAAGGAAAAGAGGGGAGAGGCA- (((.......)))((((((((...(((.....)))..))))))))(((((((((..(.....(((((.....)).)))...)..)))).))))).- ( -33.90) >consensus CGCCAGCUUGGCUGCCGCAGCACUGUGGUAGCCAUUCGUGGUGGUGCCUCCUCCGAUAUAGGUCUGCAAGUAUC__AGAGAAAAGGGGAGAGGCC_ ((((((..(((((((((((....)))))))))))..).)))))..(((((..((........(((...........)))......))..))))).. (-23.99 = -25.49 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:42 2006