Locus 3876

Sequence ID	3L_DroMel_CAF1
Location	11,220,564 – 11,220,676
Length	112
Max. P	0.772102

overview

Window 1

Location	11,220,564 – 11,220,676
Length	112
Sequences	4
Columns	115
Reading direction	reverse
Mean pairwise identity	87.84
Mean single sequence MFE	-31.88
Consensus MFE	-21.81
Energy contribution	-22.50
Covariance contribution	0.69
Combinations/Pair	1.12
Mean z-score	-2.21
Structure conservation index	0.68
SVM decision value	0.53
SVM RNA-class probability	0.772102
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11220564 112 - 23771897
---UGUAUUGUUCAAAGGUUGAUAGAGCCUAUUCAUUUGGCGACCGCUGUUUGUGUGCAACUAUGUAUGUGGCAAGUUGGAUAGAUAGUCGCAUAUACAUAUAUCUUUGGAUACA
---.....(((((((((((.(((((.(((.........))).....)))))(((((((.(((((.(((.(((....))).))).))))).))))))).....))))))))))).. ( -31.00)
>DroSim_CAF1 29532 107 - 1
---UCUAUUGUUUAAACGC-GGUAGAGCCUAUUCAUUUGGCGCCCGCUGUUUGUGUGCAACUAUGUAUGUGGCAAGUUGGAUAGAUAGUCGCAUAU----AUAUCUUUGGAUACA
---..........((((((-((....(((.........)))..)))).))))((((.(((.((((((((((((..(((.....))).)))))))))----)))...))).)))). ( -30.60)
>DroEre_CAF1 30769 107 - 1
---UCUGUUGUUUAAAGAA-GUUAGUGCCUAUUCGUUUGGCGGCCGCUGUUUGUGUGCAACUAUGUAUGUGGCAAGUUGGAUAGAUAGUCACAUAU----AUAUCUUUGGAUACA
---.....((((((((((.-((..(((.(((((..((..((.(((((.......(((((....))))))))))..))..))..))))).)))....----)).)))))))))).. ( -30.41)
>DroYak_CAF1 31527 110 - 1
ACUGCCAUUGUUUAAACAG-GGUAGCGCCUAUUUAUUUGGCGCCCGCUGUUUGUGUGCAACUAUGUAUGUGGCAAGUUGGAUAGAUAGUCACAUAU----AUAUCUUGGGAUACA
....(((((((.(((((((-((..(((((.........))))))).)))))))...)))).((((((((((((..(((.....))).)))))))))----)))...)))...... ( -35.50)
>consensus
___UCUAUUGUUUAAACAA_GGUAGAGCCUAUUCAUUUGGCGCCCGCUGUUUGUGUGCAACUAUGUAUGUGGCAAGUUGGAUAGAUAGUCACAUAU____AUAUCUUUGGAUACA
........((((((((((...((((.(((.........)))((.(((.....))).))..))))(((((((((..(((.....))).))))))))).......)))))))))).. (-21.81 = -22.50 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:53 2006