Locus 3873

Sequence ID 3L_DroMel_CAF1
Location 11,214,887 – 11,215,005
Length 118
Max. P 0.919055
window6026

overview

Window 6

Location 11,214,887 – 11,215,005
Length 118
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 85.06
Mean single sequence MFE -26.08
Consensus MFE -18.63
Energy contribution -18.11
Covariance contribution -0.52
Combinations/Pair 1.12
Mean z-score -2.38
Structure conservation index 0.71
SVM decision value 1.13
SVM RNA-class probability 0.919055
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11214887 118 - 23771897
AUGCUAAUCUCUAUCUGACUUGCAUGUUUGCGUUUUUUGAAAAGUGAUACGAAACAUUGAUCCCAGAGAAAAAAAUGGAAUGGA-AACAUGCAACUCACGUCUGAUUAGGAAAUCAAAA
.(.((((((...((.(((.((((((((((.((((....((..((((........))))..))(((..........))))))).)-))))))))).))).))..)))))).)........ ( -27.90)
>DroSec_CAF1 23924 116 - 1
AUGCUAAUCUC--ACUGACUUGCAUGUUUGCGUUU-UUGAAAAAUGAUACGAAACAUUGAACCUAGAGAAAAAAAUCGAAUGGAAAACAUGCAACUCACUGCUGAUUAGGAAAUCAAAA
.(.((((((.(--(.(((.((((((((((.(((..-((....))....)))..........((....((......))....)).)))))))))).))).))..)))))).)........ ( -25.50)
>DroSim_CAF1 24098 116 - 1
AUGCUAAUCUC--ACUGACUUGCAUGUUUGCGUUU-UUGAAAAAUGAUACGAAACAUUGAACCUAGAGAAAAAAAUCGAAUGGAAAACAUGCAACUCACUGCUGAUUAGGAAAUCACAA
.(.((((((.(--(.(((.((((((((((.(((..-((....))....)))..........((....((......))....)).)))))))))).))).))..)))))).)........ ( -25.50)
>DroEre_CAF1 25354 109 - 1
AUAUUAAUCUC--CCUGACUUGCAUGUUUGCGAGU-UUGAGGAAUGAAACGAAACAUUGAACCUAGGGAA-------GAAUGGGAAACAUGCAACUCACUGCUGAUUAGGAAAUCAAAA
...((((((((--(((((((((((....)))))))-)..(((((((........))))...)))))))).-------.....(....)..(((......))).)))))).......... ( -24.70)
>DroYak_CAF1 25655 107 - 1
GUUUUAAUCUG--CCUGACUUGCAUGUUUGCGAUU-UUGAAAAAUGAUACGAAACAUUGAAGC--AGAAA-------AAAUGUGAAACAUGCAACUCACUGCUGAUUAGGAAAUCAAAA
.((((((((.(--(.(((.(((((((((((((.((-(((...((((........))))....)--)))).-------...))).)))))))))).)))..)).))))))))........ ( -26.80)
>consensus
AUGCUAAUCUC__ACUGACUUGCAUGUUUGCGUUU_UUGAAAAAUGAUACGAAACAUUGAACCUAGAGAAAAAAAU_GAAUGGAAAACAUGCAACUCACUGCUGAUUAGGAAAUCAAAA
...((((((......(((.((((((((((.............((((........))))...((..................)).)))))))))).))).....)))))).......... (-18.63 = -18.11 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:49 2006