Locus 3859

Sequence ID 3L_DroMel_CAF1
Location 11,169,291 – 11,169,389
Length 98
Max. P 0.778800
window6008

overview

Window 8

Location 11,169,291 – 11,169,389
Length 98
Sequences 4
Columns 98
Reading direction reverse
Mean pairwise identity 91.84
Mean single sequence MFE -27.45
Consensus MFE -25.36
Energy contribution -26.93
Covariance contribution 1.56
Combinations/Pair 1.12
Mean z-score -1.53
Structure conservation index 0.92
SVM decision value 0.55
SVM RNA-class probability 0.778800
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11169291 98 - 23771897
GGCCAAGCAUGUGUGAAACUUCCUCACAGUGGAAAAACAUAUGGUGGCAAGUUCAGUGCUUAAGGUUCGAGAACGCAAGUUUCCACACUUGAUUAUAU
.((((..(((((((.....((((.......))))..))))))).)))).......(((.(((((((..(..(((....)))..))).))))).))).. ( -26.10)
>DroSec_CAF1 29570 98 - 1
GGCCAAGCAUGUGUGAAACUUCCUCUCAGUGGGAAAACAUAUGGUGGCAAGUUCAGUGCUUAAGGUUCGAGAACGCAAGUUUCCACACUUGAUUAUAU
.((((..(((((((.....(((((......))))).))))))).)))).......(((.(((((((..(..(((....)))..))).))))).))).. ( -26.40)
>DroEre_CAF1 30993 98 - 1
GGCUAAGCAUGUGUGGAACUUCCUCACAGUAGGAAAACAUAUGGUGGCAAGUUCAGUGCUUAAGGUUCGAGAACGCAGGUUUUCACACUUGAGUAUAU
.((((..(((((((.....(((((......))))).))))))).)))).......(((((((((((..((((((....)))))))).))))))))).. ( -30.10)
>DroYak_CAF1 32101 98 - 1
GGCCAAGCAUGUGUGAAACUUCCUCGCAGUGGGAAAACAUAUGGUGGCAAGUUCAGUGCUUAAGGUUCGGAAACACAAGUUUCCACACUCCAGAUUAU
.((((..(((((((.....(((((......))))).))))))).))))((((.....))))..((...((((((....)))))).....))....... ( -27.20)
>consensus
GGCCAAGCAUGUGUGAAACUUCCUCACAGUGGGAAAACAUAUGGUGGCAAGUUCAGUGCUUAAGGUUCGAGAACGCAAGUUUCCACACUUGAGUAUAU
.((((..(((((((.....(((((......))))).))))))).)))).......(((((((((((..((((((....)))))))).))))))))).. (-25.36 = -26.93 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:31 2006