Locus 3850

Sequence ID 3L_DroMel_CAF1
Location 11,154,346 – 11,154,438
Length 92
Max. P 0.669841
window5996

overview

Window 6

Location 11,154,346 – 11,154,438
Length 92
Sequences 3
Columns 92
Reading direction forward
Mean pairwise identity 90.81
Mean single sequence MFE -16.83
Consensus MFE -12.82
Energy contribution -12.71
Covariance contribution -0.11
Combinations/Pair 1.07
Mean z-score -2.51
Structure conservation index 0.76
SVM decision value 0.29
SVM RNA-class probability 0.669841
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11154346 92 + 23771897
AGAACAAUACCACCCCAUAACACCCACCCACUCACAUGCAAGGCGGUGGCAAAUAUAAAUGCAUUCAUUUUGCAAAAUAAACUCGGAUAUUC
.........((............(((((..((........))..)))))..........((((.......))))..........))...... ( -13.30)
>DroSec_CAF1 14952 88 + 1
AGAACCACACCAACCCAUAGCACCCACC----CACAUGCAAGGGGUUGGAAAAUAUAAAUGCAUUCAUUUUGCAAAAUAAACUCGGAUAUUC
....((...(((((((...(((......----....)))...)))))))..........((((.......))))..........))...... ( -20.60)
>DroSim_CAF1 15680 88 + 1
AGAACAACACCAACCCAUACCACCCACC----CACAUGCAGGGGGUUGGAAAAUAUAAAUGCAUUCAUUUUGCAAAAUAAACUCGGAUAUUC
.........((........(((.((.((----(.......))))).)))..........((((.......))))..........))...... ( -16.60)
>consensus
AGAACAACACCAACCCAUAACACCCACC____CACAUGCAAGGGGUUGGAAAAUAUAAAUGCAUUCAUUUUGCAAAAUAAACUCGGAUAUUC
.((......(((((((....((..............))....)))))))..........((((.......))))........))........ (-12.82 = -12.71 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:20 2006