| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,133,289 – 11,133,409 |
| Length | 120 |
| Max. P | 0.715500 |
| Location | 11,133,289 – 11,133,409 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 91.06 |
| Mean single sequence MFE | -39.27 |
| Consensus MFE | -33.24 |
| Energy contribution | -32.42 |
| Covariance contribution | -0.83 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.715500 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11133289 120 - 23771897 AGGCCGCCGGUGGAAUGAUCUCACGAGAAGCGGCAAUCUCUUGCCAAUUUUCGAAAUUAUUAUCAAUUACCGUCUUGCCGGUGGUGUGGUAGACCAUCCAGUGUUUGGCGAUCGAGCACU ..((((((((..(.(((......((((((..(((((....)))))..)))))).((((......))))..))).)..))))))))((((....))))..((((((((.....)))))))) ( -42.40) >DroVir_CAF1 30413 120 - 1 AUGCGGCCGGCGGAAUUAUCUCACGAGAAGCGGCAAUCUCUUGCCAAUUUUCGAAAUUAUUAUCAAUUACUGUUUUGCCGGUGGCAUGGUAGGCCAUCCAGUGCUUGGCGAUCGAGCACU ((((.(((((((((((.......((((((..(((((....)))))..)))))).((((......))))...))))))))))).))))((....))....((((((((.....)))))))) ( -45.80) >DroGri_CAF1 32089 120 - 1 AUGCGGCCGGCGGUAUAAUCUCACGAGAAGCGGCAAUUUCUUGCCAAUUUUCGAAAUUAUUAUCAAUUAUUGUUUUGCCAGUGGUGUGGUAGGCCAUCCAGUGCUUGGCUAUCGAGCACU ....((((...............((((((..(((((....)))))..)))))).......((((((((((((......))))))).)))))))))....((((((((.....)))))))) ( -38.30) >DroWil_CAF1 38964 120 - 1 AUGCGGCCGGCGGAAUGAUCUCACGAGAAGCAGCAAUUUCUUGCCAAUUUUCGAAAUUAUUAUCAAUUACUGUUUUUCCGGUGGUAUGAUAGGCCAUCCAAUGUUUGGCUAUCGAACACU ((((.(((((..((((.......((((((...((((....))))...)))))).((((......))))...))))..))))).))))(((((.(((.........))))))))....... ( -31.90) >DroMoj_CAF1 34872 120 - 1 AUGCGGCCGGCGGUAUUAUCUCACGGGAAGCGGCAAUUUCUUGCCAAUUUUCGAAAUUAUUAUCAAUUACUGUUUUGCCGGUGGUGUGGUAGGCCAUCCAGUGCUUGGCGAUCGAGCACU ..((.((((((((((.((.....((..((..(((((....)))))..))..))....)).))))(((....)))..)))))).))((((....))))..((((((((.....)))))))) ( -40.00) >DroAna_CAF1 30356 120 - 1 AAGCAGCCGGGGGAAUGAUCUCACGAGAUGCGGCGAUCUCUUGCCAAUUUUCGAAAUUAUUAUCAAUUACCGUCUUGCCGGUGGUGUGGUAAGCCAUCCAGUGUUUGGCGAUCGAGCACU .....(((((((((....)))).(((((((.(((((....))))).......((........))......))))))))))))((.((((....))))))((((((((.....)))))))) ( -37.20) >consensus AUGCGGCCGGCGGAAUGAUCUCACGAGAAGCGGCAAUCUCUUGCCAAUUUUCGAAAUUAUUAUCAAUUACUGUUUUGCCGGUGGUGUGGUAGGCCAUCCAGUGCUUGGCGAUCGAGCACU ........(((............((((((..(((((....)))))..))))))......(((((((((((((......))))))).)))))))))....((((((((.....)))))))) (-33.24 = -32.42 + -0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:13 2006