Locus 3834

Sequence ID 3L_DroMel_CAF1
Location 11,076,576 – 11,076,679
Length 103
Max. P 0.565992
window5970

overview

Window 0

Location 11,076,576 – 11,076,679
Length 103
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 91.94
Mean single sequence MFE -31.04
Consensus MFE -25.86
Energy contribution -25.46
Covariance contribution -0.40
Combinations/Pair 1.13
Mean z-score -1.30
Structure conservation index 0.83
SVM decision value 0.06
SVM RNA-class probability 0.565992
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11076576 103 - 23771897
GGUGUUCCUAAAUGGAUAUAUCUGCCUGGAACUCUAUGCGGCAACCAGGGAUCUUGACUACAAUUUCGGAUGUCAGCCAUGUCGGGUUAGCUUUGAUCCACAC
(((..(((.....))).....((((.(((....))).))))..)))..(((((..(((..(......)...)))((((......))))......))))).... ( -23.70)
>DroSec_CAF1 9328 103 - 1
GGUGUUCCUAAAUGGAUAUAUCUGCCUGGAACUCUAUGCGGCAUCCAGGGAUCUUGACUACAACUUCGGAUGUCAGCCAUGUCGGGUUAGCUUUGACCCGCAC
((((((((.....(((....)))....))))).......(((((((..((...(((....)))))..))))))).))).((.(((((((....))))))))). ( -31.60)
>DroSim_CAF1 9168 103 - 1
GGUGUUCCUAAAUGGAUAUAUCUGCCUGGAACUCUAUGCGGCAUCCAGGGAUCUUGACUACAACUUCGGAUGUCAGCCAUGUCGGGUUAGCUUUGACCCGCAC
((((((((.....(((....)))....))))).......(((((((..((...(((....)))))..))))))).))).((.(((((((....))))))))). ( -31.60)
>DroEre_CAF1 9257 103 - 1
GGUGUUCCUGAAUGGAUACAUCUGUAUGGAACUCUAUACGGCAUCCAGGGAUCUUGGCUACAACAUCGGAUGUCAGCCAUAUCGGGUUAGCUUUAACCCACAC
((((((((.....))).))))).((((((....))))))(((((((...(((.(((....))).)))))))))).........((((((....)))))).... ( -34.00)
>DroYak_CAF1 9404 103 - 1
GGUAUUCCUGAAUGGAUACAUCUGUUUGGAACUCUAUACGGCAACCAGGGAUCUUGGCUACAACUUCGGAUGUCAGCCAUGCCGGGUUAGCUUUAACCCACUC
((((((((((.(((....)))((((.(((....))).))))....))))))...((((((((.(....).))).)))))))))((((((....)))))).... ( -34.30)
>consensus
GGUGUUCCUAAAUGGAUAUAUCUGCCUGGAACUCUAUGCGGCAUCCAGGGAUCUUGACUACAACUUCGGAUGUCAGCCAUGUCGGGUUAGCUUUGACCCACAC
((((((((.....))).))))).((.(((....))).))(((((((...((..(((....)))..))))))))).........((((((....)))))).... (-25.86 = -25.46 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:49 2006