| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,038,833 – 11,038,944 |
| Length | 111 |
| Max. P | 0.909437 |
| Location | 11,038,833 – 11,038,944 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 81.41 |
| Mean single sequence MFE | -34.42 |
| Consensus MFE | -24.50 |
| Energy contribution | -25.30 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.71 |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.909437 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11038833 111 - 23771897 CGGCUGCGUCUUGUUGGCGCGAUCAGCUGUUGGACGUUGGUAGUGUUGGCAAACGAAGCAAUGUCUAGAAAUAGCCAAAAGAGAUACUGCUCUUG----AUUAAUAGCAAAAUAU .(..((((((.....))))))..).((((((((.((..(((((((((.((.......))..((.(((....))).)).....)))))))))..))----.))))))))....... ( -34.90) >DroSec_CAF1 1549 111 - 1 CGGCUGCGUCUUGUUGGCGCGAUCAGCUGUUGGACGUCGAUAGUGUUGGCAAACGAAGCAAUGGCUAGAAAUAGCCAAAAGAGAGGCUUCUUUGG----AUAAAUAGAAAAAUAU ..(((.(((.((((..((((.(((.((........)).))).))))..))))))).)))..((((((....))))))((((((....))))))..----................ ( -34.80) >DroSim_CAF1 1975 111 - 1 CGGCUGCGUCUUGUUGGCGCGAUCAGCUGUUGGACGUUGACAGUGUUGGCAAACGAAGCAAUGGCUAGAAAUAGCCAAAAGAGAGGCUUCUUUUG----AUAAAUAGCAAAAUAU ..(((.(((.((((..((((..(((((........)))))..))))..))))))).)))...(((((....)))))(((((((....))))))).----................ ( -37.70) >DroEre_CAF1 1695 112 - 1 CGGCUGCGUCCAGUUGGCGCGAUCAGCUGUCGCAGCCCGGUAGUGUUGGCAAACGUAGCAAUGGCUAGAAAGAUUCGAAACAA--AAUUCUUGUGGG-GAUAUAAAGCAAAAUAC ..(((((((...((..((((.(((.((((...))))..))).))))..))..)))))))....(((......((((...((((--.....))))..)-)))....)))....... ( -31.60) >DroYak_CAF1 1675 115 - 1 CGGCUGCGUCUAGUUGGCGCGAUCAGCUGUUGCGCCCAGGUGGUGUUGGCUAACGUAGCAAUGGCUAGAAAUAUCCAAAACAGAAACUUCUUGUGUAAAAUAGUAAAAAUAAUAC ..(((((((.((((..((((.(((.((....)).....))).))))..)))))))))))..(((.((....)).)))..(((.((.....)).)))................... ( -33.10) >consensus CGGCUGCGUCUUGUUGGCGCGAUCAGCUGUUGGACGUCGGUAGUGUUGGCAAACGAAGCAAUGGCUAGAAAUAGCCAAAAGAGAGACUUCUUUUG____AUAAAUAGCAAAAUAU ..(((.(((.((((..((((.(((.((........)).))).))))..))))))).)))..((((((....))))))...................................... (-24.50 = -25.30 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:34 2006