| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,012,245 – 11,012,365 |
| Length | 120 |
| Max. P | 0.700170 |
| Location | 11,012,245 – 11,012,365 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.39 |
| Mean single sequence MFE | -47.18 |
| Consensus MFE | -33.45 |
| Energy contribution | -32.02 |
| Covariance contribution | -1.44 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.700170 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11012245 120 - 23771897 GUACACUUGCUAAAGGGAUCGCUUGGCUCCGGAAUAUUGGCCAUGCCAAUGGCCUUCUCCCACGCUGGAUUGUGGUUCGGUUUGGUGGCCACCUUCGCGGUGGGCACCUUGUGCACCUAC ((((((((....)))((((((((..((...(((.....((((((....))))))...)))...))..)...))))))).....((((.(((((.....))))).)))).)))))...... ( -46.80) >DroVir_CAF1 154876 120 - 1 GUGCAUCUGUUGAAAGGCUCACUGGGUUCAGGCAUUCUGGCCAUGCCCAUGGCCUUUGCCAAUGCCGGUCUGUGGUUUGGUCUGGUGGCCACCUUAUUCGUGGGCACCUUGUGCACCUAC ((((((......((((((.((.(((((...(((......)))..)))))))))))))(((((.((((.....)))))))))..((((.((((.......)))).))))..)))))).... ( -49.30) >DroGri_CAF1 123048 120 - 1 AUGCAUCUGCUAAAGGGAUCACUCGGCUCGGGCAUUCUGGCCAUGCCCAUGGCCUUCGCCAAUGCCGGCCUGUGGUUCGGUCUGGUAGGCACGCUAGCCGUGGGCGCCCUGUGUACCUAC ..((....))...(((...(((..(((...(((......)))..(((((((((....(((..((((((.(((.....))).)))))))))......))))))))))))..)))..))).. ( -50.40) >DroWil_CAF1 1339 120 - 1 GUGCAUCUGCUUAAGGGAUCUCUGGGCUCCGGUAUAUUGGCCAUGCCCAUGGCCUUCAUGAAUGCAGGCCUGUGGUUUGGAUUGGUGGCCACUUUCGCUGUAGGCACUCUCUGCACAUAC (((((..((((((((.((....(((((...(((......)))..)))))(((((...((.(((.((((((...)))))).))).)))))))...)).)).)))))).....))))).... ( -43.40) >DroMoj_CAF1 162086 120 - 1 GUGCAUCUGCUUAAGGGCUCUCUGGGCUCCGGCAUAUUGGCCAUGCCCAUGGCCUUCGCCAAUGCCGGUCUGUGGUUCGGCCUGUUGGCCACCUUUGCCGUCGGCACCUUGUGCACCUAC ((((((.((((...(((((.....)))))(((((....((((((....))))))...(((((((((((........)))))..))))))......)))))..))))....)))))).... ( -49.20) >DroAna_CAF1 139222 120 - 1 GUUCACCUGCUGAAGGGAUCCCUGGGCUCUGGAAUCCUGGCCAUGCCCAUGGCCUUCUCCCACGCCGGUCUGUGGUUCGGCUUGGUGGCCACCUUCGCCGUUGGCACUCUGUGCACCUAC ...((.(.((.(((((......(((((..(((........))).)))))(((((.....(((.(((((........))))).))).)))))))))))).).))((((...))))...... ( -44.00) >consensus GUGCAUCUGCUAAAGGGAUCACUGGGCUCCGGCAUACUGGCCAUGCCCAUGGCCUUCGCCAAUGCCGGUCUGUGGUUCGGUCUGGUGGCCACCUUCGCCGUGGGCACCCUGUGCACCUAC .......(((...((((.......(((...(((.....((((((....))))))...)))...))).(((..((((..((((....))))......))))..))).))))..)))..... (-33.45 = -32.02 + -1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:24 2006