| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,007,286 – 11,007,383 |
| Length | 97 |
| Max. P | 0.611453 |
| Location | 11,007,286 – 11,007,383 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.21 |
| Mean single sequence MFE | -29.55 |
| Consensus MFE | -21.39 |
| Energy contribution | -22.42 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.611453 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11007286 97 - 23771897 GUGGCUGCGCCCCAGGCUGCAAUUGUCUGCUUAAAAGCGCUCAUUCUGUCCACAAUGAAGCCACAUAACUUGGCCGCAGUUAC-------CGUCUG-------------UUAC-CCAU-- ((((((((((..(((((.......))))).......))))(((((........)))))))))))......(((..((((....-------...)))-------------)...-))).-- ( -26.90) >DroVir_CAF1 149298 111 - 1 -UUGCAGCGCCGCAGGCUGCAAUUGUCUGCUUAAAAGCGUUCAUUCUGUCCACAAUGAAGCCACAUAACUUGGCCGCAGUUAC-------UGCCAGCCGAGGCAGUCCAACAG-CCAGAA -(((((((.......)))))))...((((((.....(((((((((........))))))((((.......))))))).(((((-------((((......))))))..)))))-.)))). ( -34.80) >DroPse_CAF1 147268 101 - 1 GUGGCUGCGCCCCAGGCUGCAAUUGUCUGCUUAAAAGCGUUCAUUCUGUCCACAAUGAAGCCACAUAACUUGGCCGCAGUUACUCGUACCCGCCUG----------------C-CCCU-- (((((((((((.(((((.......))))).......((.((((((........))))))))..........)).))))))))).............----------------.-....-- ( -26.10) >DroGri_CAF1 118285 106 - 1 CUUACUGCGCCGCAGGCUGCAAUUGUCUGCUUAAAAGCGUUCAUUCUGUCCACAAUGAAGCCACAUAACUUGGCCGCAGUUAC-------UUAC----UUGGCAGUCAGACAG-CCAU-- ...((((((((((((((.......))))))......((.((((((........))))))))..........)).))))))...-------....----.((((.(.....).)-))).-- ( -30.10) >DroAna_CAF1 133997 98 - 1 GUGGCUGCGCCCCAGGCUGCAAUUGUCUGCUUAAAAGCGCUCAUUCUGUCCACAAUGAAGCCACAUAACUUGGCCGCAGUUAC-------CGUCUG-------------UUAGGCCAU-- ((((((((((..(((((.......))))).......))))(((((........)))))))))))......(((((((((....-------...)))-------------)..))))).-- ( -33.30) >DroPer_CAF1 136465 101 - 1 GUGGCUGCGCCCCAGGCUGCAAUUGUCUGCUUAAAAGCGUUCAUUCUGUCCACAAUGAAGCCACAUAACUUGGCCGCAGUUACUCGUACCCGCCUG----------------C-CCCU-- (((((((((((.(((((.......))))).......((.((((((........))))))))..........)).))))))))).............----------------.-....-- ( -26.10) >consensus GUGGCUGCGCCCCAGGCUGCAAUUGUCUGCUUAAAAGCGUUCAUUCUGUCCACAAUGAAGCCACAUAACUUGGCCGCAGUUAC_______CGCCUG_______________AC_CCAU__ (((((((((((.(((((.......))))).......((.((((((........))))))))..........)).)))))))))..................................... (-21.39 = -22.42 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:18 2006