| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,973,222 – 10,973,319 |
| Length | 97 |
| Max. P | 0.554398 |
| Location | 10,973,222 – 10,973,319 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 84.29 |
| Mean single sequence MFE | -28.43 |
| Consensus MFE | -16.07 |
| Energy contribution | -17.48 |
| Covariance contribution | 1.42 |
| Combinations/Pair | 1.10 |
| Mean z-score | -3.19 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.554398 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10973222 97 - 23771897 AUUCC--CUUUUUUUUUGCUUUUAACUUAUUUUUACCGCUCGCCGUCUGC-UGCUGCUUCAGAUGAAGCAUGAAAAUAAGUUUCGAGCUGCAGAGAGAGG ....(--((((((((..((((..((((((((((((..((..((.....))-.))((((((....))))))))))))))))))..))))...))))))))) ( -32.30) >DroSec_CAF1 105411 96 - 1 AAUCC--CUUUU-UUUUGCUUUUAACUUAUUUUUACUGCUCUCCGACUGC-UGCUGCUACAGAUGAAGCAUGAAAAUAAGUUUCGAGCUGCAGAGAGAGG ....(--(((((-(((.((((..((((((((((((.(((((..(....((-....))....)..).))))))))))))))))..))))...))))))))) ( -29.60) >DroSim_CAF1 103638 97 - 1 AUUCC--CUUUUUUUUUGCUUUUAACUUAUUUUUACCGCUCCCCGUCUGC-UGCUGCUACAGAUGAAGCAUGAAAAUAAGUUUCGAGCUGCAGAGAGAGG ....(--((((((((..((((..((((((((((((..(((...((((((.-........)))))).))).))))))))))))..))))...))))))))) ( -31.20) >DroEre_CAF1 106095 96 - 1 AUUCC--CUUUU-UUUUGCUUUUAACUUAUUUUUACCGCUCUGCGUCUGC-CGCUGCUGCAGAUGAAGCAUGAAAAUAAGUUUCGAGCUGCAGACAGAGA .....--((((.-(((.((((..((((((((((((..(((...(((((((-.......))))))).))).))))))))))))..))))...))).)))). ( -29.70) >DroYak_CAF1 108853 98 - 1 AUUCCCCCUUUU-UUUUGCUGUUAACUUAUUUUUACCGCUCUGCGUCUGC-UGCUGUUGCAGAUGAAGCAUGAAAAUAAGUUUCGAGCUGCAGAGCGAGA .......(((..-((((((.(((((((((((((((..(((...(((((((-.......))))))).))).))))))))))))...))).)))))).))). ( -30.70) >DroAna_CAF1 99486 87 - 1 AUUCC-----UU-UUUUGCAUUUAACUUUU---UGCCUC----CACCAGCCAGAAGUCUCAGAUGAAGCAUGAAAAUAAGUUUUGGGAUGCAGAGAAAAC .....-----((-((((((((((.((((((---.((...----.....)).)))))).......(((((((....))..))))).))))))))))))... ( -17.10) >consensus AUUCC__CUUUU_UUUUGCUUUUAACUUAUUUUUACCGCUCUCCGUCUGC_UGCUGCUACAGAUGAAGCAUGAAAAUAAGUUUCGAGCUGCAGAGAGAGG .........(((.((((((....((((((((((((..(((...((((((..........)))))).))).)))))))))))).......)))))).))). (-16.07 = -17.48 + 1.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:59 2006