Locus 380

Sequence ID 3L_DroMel_CAF1
Location 1,100,849 – 1,100,946
Length 97
Max. P 0.966473
window560

overview

Window 0

Location 1,100,849 – 1,100,946
Length 97
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 88.25
Mean single sequence MFE -9.26
Consensus MFE -7.82
Energy contribution -7.66
Covariance contribution -0.16
Combinations/Pair 1.08
Mean z-score -2.01
Structure conservation index 0.84
SVM decision value 1.60
SVM RNA-class probability 0.966473
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1100849 97 + 23771897
CAACAACUCAAUUACCAACAACAAAAGAACCGUCGGCCAACAUUCAUCACCACGAAAUUAAAUGGUCUUUGUUUAUAUGUACAUACAUAUACAUAUA
...................((((((.((....))(((((.......((.....)).......)))))))))))((((((((........)))))))) ( -11.24)
>DroSec_CAF1 18109 87 + 1
CAACAACUCAAUUACCAACAACAAAAGAACCGUCGGCCAACAUUCAUCACCACGAAAUUAAAUGGCCUUUGUUUAUAC----------AUACAUACA
...................((((((.((....))(((((.......((.....)).......))))))))))).....----------......... (  -9.34)
>DroSim_CAF1 11250 87 + 1
CAACAACUCAAUUACCAACAACAAAAGAACCGUCGGCCAACAUUCAUCACCACGAAAUUAAAUGGCCUUUGUUUAUAC----------AUACAUACA
...................((((((.((....))(((((.......((.....)).......))))))))))).....----------......... (  -9.34)
>DroEre_CAF1 12200 79 + 1
CAACAACUCAAUUACCAACAACAAAAGAACCGUCGGCCAACAUUCAUCACCACAAAAUUAAAUGGCCUUUGUUUAU------------------AUA
...................((((((.((....))(((((.......................)))))))))))...------------------... (  -8.20)
>DroYak_CAF1 13949 79 + 1
CAACAACUCAAUUACCAACAACAAAAGAACCGUCGGCCAACAUUCAUCACCACAAAAUUAAAUGGCCUUUGUUUAU------------------AUA
...................((((((.((....))(((((.......................)))))))))))...------------------... (  -8.20)
>consensus
CAACAACUCAAUUACCAACAACAAAAGAACCGUCGGCCAACAUUCAUCACCACGAAAUUAAAUGGCCUUUGUUUAUA___________AUACAUAUA
...................((((((.((....))(((((.......................)))))))))))........................ ( -7.82 =  -7.66 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:31 2006