Locus 38

Sequence ID 3L_DroMel_CAF1
Location 143,534 – 143,624
Length 90
Max. P 0.987916
window46

overview

Window 6

Location 143,534 – 143,624
Length 90
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 75.11
Mean single sequence MFE -28.87
Consensus MFE -13.95
Energy contribution -13.63
Covariance contribution -0.32
Combinations/Pair 1.18
Mean z-score -2.63
Structure conservation index 0.48
SVM decision value 2.10
SVM RNA-class probability 0.987916
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 143534 90 + 23771897
UGAAGUGGGUGUGGCACUC----GGCAUGCAAAUCAUGUCAAAUGUCGCACUCUGCUCAGCUCAGAU-C-AGUUCUGUUCGAAACUGCAGCUCCAA
(((.(..(((((((((...----((((((.....))))))...)))))))).)..))))((((((..-.-..(((.....))).))).)))..... ( -28.00)
>DroVir_CAF1 47056 70 + 1
UGACGUGGGCGUGGCACUU----GGCAUGCAAAUCAUGUCAAAUGUCACUUUCAACUG--CACAACUG-------------------CAGCUGCA-
....(..(..((((((.((----((((((.....)))))))).))))))......(((--((....))-------------------))))..).- ( -25.90)
>DroPse_CAF1 28029 86 + 1
UGAUGUGGGCGUGGCACUUGUGUGGCAUGCAAAUCAUGUCAAAUGUCACAUUCAACUU-CCACAAAA-A-ACUGCAGCU------UGCAGCUGCA-
...((((((((((.(((....))).))))).......((..((((...))))..))..-)))))...-.-...(((((.------....))))).- ( -28.60)
>DroSim_CAF1 17708 90 + 1
UGAAGUGGGCGUGGCACUC----GGCAUGCAAAUCAUGUCAAAUGUCGCACUCUGCUCAGCUCAGAU-C-AGUUCUGUUCGGAACUGCAGCUGCAC
...((..((.((((((...----((((((.....))))))...)))))).).)..))(((((.....-(-((((((....))))))).)))))... ( -30.70)
>DroMoj_CAF1 34988 84 + 1
UGACGUGGGCGUGGCACUU----GGCAUGCAAAUCAUGUCAAAUGUCACUUUCAACUU--CACAGUUGCAACUGCAGCG-----CAGCAGCUGCA-
(((..((((.((((((.((----((((((.....)))))))).)))))).))))...)--))..(((((....)))))(-----(((...)))).- ( -31.40)
>DroPer_CAF1 27828 86 + 1
UGAUGUGGGCGUGGCACUUGUGUGGCAUGCAAAUCAUGUCAAAUGUCACAUUCAACUU-CCACAAAA-A-ACUGCAGCU------UGCAGCUGCA-
...((((((((((.(((....))).))))).......((..((((...))))..))..-)))))...-.-...(((((.------....))))).- ( -28.60)
>consensus
UGAAGUGGGCGUGGCACUU____GGCAUGCAAAUCAUGUCAAAUGUCACAUUCAACUU__CACAAAU_C_ACUGCAGCU______UGCAGCUGCA_
.......(((((((((.......((((((.....))))))...))))))...........................((........)).))).... (-13.95 = -13.63 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:28 2006