Locus 3797

Sequence ID 3L_DroMel_CAF1
Location 10,957,291 – 10,957,396
Length 105
Max. P 0.608980
window5919

overview

Window 9

Location 10,957,291 – 10,957,396
Length 105
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.09
Mean single sequence MFE -32.29
Consensus MFE -20.97
Energy contribution -21.58
Covariance contribution 0.61
Combinations/Pair 1.18
Mean z-score -1.37
Structure conservation index 0.65
SVM decision value 0.15
SVM RNA-class probability 0.608980
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10957291 105 - 23771897
UCGGGUCACAUGCCCAUCACCAGCGCUGCCA-------CGCCCAACCA--------CCAGCCACCACCCAAUUCCCCCUAUGCCAAUGCCAUGAACGCUGCCCAUGCAGCGGCAGCAGCG
..((((.....)))).......((((((((.-------..........--------.........................((....)).......(((((....))))))))))).)). ( -28.70)
>DroSec_CAF1 89553 105 - 1
UCGGGUCACAUGCCCAUCACCAGCGCUGCCA-------CGCCCAACCA--------CCAGCCACCGCCCAAUUCCCCCUAUGCCAAUGCCAUGAACGCUGCCCAUGCAGCGGCAGCAGCG
..((((.....)))).......((((((((.-------..........--------...((....)).............................(((((....))))))))))).)). ( -29.00)
>DroSim_CAF1 86989 105 - 1
UCGGGUCACAUGCCCAUCACCAGCGCUGCCA-------CGCCCAACCA--------CCAGCCACCGCCCAAUUCCCCCUAUGCCAAUGCCAUGAACGCUGCCCAUGCAGCGGCAGCAGCG
..((((.....)))).......((((((((.-------..........--------...((....)).............................(((((....))))))))))).)). ( -29.00)
>DroEre_CAF1 90021 104 - 1
UCGGGUCACAUGCCCAUCACCACCGCUGCCA-------CGCCCAACCA--------CCAGCCACCGCCCAAUUCCCCGUACGCCAAUGCUAUGAACGCUGCCCACGCAGCGGCAGCAGC-
..((((.....)))).........((((((.-------..........--------....................((((.((....))))))...(((((....)))))))))))...- ( -29.90)
>DroAna_CAF1 84067 105 - 1
UCCGGACACACUCCUAGCACGGCAGCGGCAA-------CCCCCAACCA--------CCAGCCGCCUCCUGGAUCCCCCUACGCUAAUGCCAUGAAUGCUGCCCAUGCGGCGGCAGCGGCA
...(((.....)))((((..((..(((((..-------..........--------...)))))..)).((.....))...)))).((((.....(((((((.....)))))))..)))) ( -33.86)
>DroPer_CAF1 81383 120 - 1
UCGGGGCACACGCCCAUCUCCGCCUCCGCCAGCCAUGCCGCCCCGCCAUCAUCGAACCAGCAGCAGCAAAUGUCGCCGUACGCCACCGCCAUGUCGGCGGCCCAUGCAGCAGCGGCGGCG
...((((....)))).....((((.((((..((..(((.((..................)).)))(((...(((((((.((((....))...)))))))))...))).)).)))).)))) ( -43.27)
>consensus
UCGGGUCACAUGCCCAUCACCACCGCUGCCA_______CGCCCAACCA________CCAGCCACCGCCCAAUUCCCCCUACGCCAAUGCCAUGAACGCUGCCCAUGCAGCGGCAGCAGCG
..((((.....)))).........((((((...................................................((....)).......(((((....))))))))))).... (-20.97 = -21.58 +   0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:52 2006