Locus 3795

Sequence ID 3L_DroMel_CAF1
Location 10,954,591 – 10,954,696
Length 105
Max. P 0.514133
window5917

overview

Window 7

Location 10,954,591 – 10,954,696
Length 105
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 86.04
Mean single sequence MFE -35.58
Consensus MFE -28.84
Energy contribution -30.03
Covariance contribution 1.20
Combinations/Pair 1.04
Mean z-score -1.67
Structure conservation index 0.81
SVM decision value -0.04
SVM RNA-class probability 0.514133
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10954591 105 + 23771897
-GUGGCAAAACUGGGAAAAGUGGAAAAAGCGGGGGCUGCGUGCCAAAAUGCAGUUUCGUGACCGGCGAAAGGAGCUGACUGCGCCUUGUAAGCGAUUCCCAUUGCC
-..(((((...((((((..((....((.((((..(((((((......)))))))..).....((((.......))))....))).))....))..))))))))))) ( -38.70)
>DroSec_CAF1 86942 87 + 1
-------------------GUGGGAAAAGCGGGGGCUGCGUGCCAAAAUGCAGUUUCGUGACCGGCGAAAGGAGCUGACUGCGCCUUGUAAGCGAUUCCCAUUGCC
-------------------(((((((..((.(..(((((((......)))))))..)......((((...((......)).))))......))..))))))).... ( -34.00)
>DroSim_CAF1 84323 96 + 1
-GUGGCUAAA---------GUGGGAAAAGCGGGGGCUGCGUGCCAAAAUGCAGUUUCGUGACCGGCGAAAGGAGCUGACUGCGCCUUGUAAGCGAUUCCCAUUGCC
-..(((...(---------(((((((..((.(..(((((((......)))))))..)......((((...((......)).))))......))..))))))))))) ( -38.00)
>DroEre_CAF1 87309 92 + 1
--------------GAAAAGCUGGAAAAGCGGGGGCUGCGUGCCAAAAUGCAGUUUCGUGACCGGCGAAAGGAGCUGACUGCGCCUUGUAAGCGAUUCCCAUUGCC
--------------.....(((((....(((..(.((((((......)))))))..)))..)))))..((((.((.....)).))))....(((((....))))). ( -32.40)
>DroYak_CAF1 89150 105 + 1
-UUGGGAAAAGCGAGAAAAGUGGGAAAAGCGGGGGCUGCGUGCCAAAAUGCAGUUUCGUGACCGGCGAAAGGAGCUGACUGCGCCUUGUAAGCGAUUCCCAUUGCC
-.((((((..((.......((.((....(((..(.((((((......)))))))..)))..)).))..((((.((.....)).))))....))..))))))..... ( -38.30)
>DroAna_CAF1 81546 89 + 1
UGUGGCC-----------------GAAAGCGGGGGCUGCGUGCCAAAAUGCAGUUUCGUGACCGGCGAAAGGAGCUGACUGCGCCUUGUAAGCGAUUCCCAUUGCC
....(((-----------------(...(((..(.((((((......)))))))..)))...))))..((((.((.....)).))))....(((((....))))). ( -32.10)
>consensus
_GUGGC_____________GUGGGAAAAGCGGGGGCUGCGUGCCAAAAUGCAGUUUCGUGACCGGCGAAAGGAGCUGACUGCGCCUUGUAAGCGAUUCCCAUUGCC
...................(((((((..((.(..(((((((......)))))))..)......((((...((......)).))))......))..))))))).... (-28.84 = -30.03 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:50 2006