Locus 3781

Sequence ID 3L_DroMel_CAF1
Location 10,915,449 – 10,915,565
Length 116
Max. P 0.836311
window5895

overview

Window 5

Location 10,915,449 – 10,915,565
Length 116
Sequences 4
Columns 116
Reading direction reverse
Mean pairwise identity 69.31
Mean single sequence MFE -20.50
Consensus MFE -12.96
Energy contribution -12.65
Covariance contribution -0.31
Combinations/Pair 1.29
Mean z-score -1.46
Structure conservation index 0.63
SVM decision value 0.73
SVM RNA-class probability 0.836311
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10915449 116 - 23771897
AGUUGAAUGAGAGAUUUAUGGCUAAUACCAAUAGAUAGGAGUGAUCAAGGUUACACAUUACUCGCAUAUGUGCUAUAUAUAAAACUCAUAUGAUUCUCAUAUUCGAAUACGAAUGA
......(((((((((((((((......)).))))))..(((((((...(....)..))))))).((((((.(............).)))))).)))))))(((((....))))).. ( -22.10)
>DroSec_CAF1 48358 93 - 1
AGUUGAAUGAGAGAUUUAUGGUUAAU-CCAAUAGAUACUAGUGAUCAAGGUCACACAUUGCUC----------------------UCAUAUGAUUAUCAUAUUCGUAUACGAAUGA
(((((.(((((((((((((((.....-)).))))))....(((((....)))))......)))----------------------)))).)))))....((((((....)))))). ( -24.70)
>DroSim_CAF1 43890 94 - 1
AGCUGAAUGGGAGAUUUAUGGUUAAUACCAAUAGAUACGAGUGAUCAAGGUCACACAUUGCUC----------------------UCAUAUGAUUAUCAUAUUCGAAUACGUAUGA
......((((((((((((((((....))).))))))....(((((....)))))......)))----------------------)))).......((((((........)))))) ( -22.20)
>DroYak_CAF1 47449 89 - 1
AGUUGUGUGGAAGAUUUAUGGCAAACACCAAUUUAUACGAAUGAUGAAGGUCAUG------------------------UAAAAC-GUAGUGAUUCUCAUAUUUAAAUACUAAC--
..(((((((((.......(((......))).)))))))))...((((..(((((.------------------------......-...)))))..))))..............-- ( -13.00)
>consensus
AGUUGAAUGAGAGAUUUAUGGCUAAUACCAAUAGAUACGAGUGAUCAAGGUCACACAUUGCUC______________________UCAUAUGAUUAUCAUAUUCGAAUACGAAUGA
...((((((.((((.((((((......))...........(((((....)))))...................................)))).)))).))))))........... (-12.96 = -12.65 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:28 2006