Locus 3773

Sequence ID 3L_DroMel_CAF1
Location 10,906,425 – 10,906,538
Length 113
Max. P 0.792959
window5884

overview

Window 4

Location 10,906,425 – 10,906,538
Length 113
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 94.42
Mean single sequence MFE -23.08
Consensus MFE -21.24
Energy contribution -21.27
Covariance contribution 0.03
Combinations/Pair 1.04
Mean z-score -1.19
Structure conservation index 0.92
SVM decision value 0.59
SVM RNA-class probability 0.792959
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10906425 113 - 23771897
GUGGAAUGAUUGCAUGCAACAUUUACCGUAUUAAUAAAUUAUGAGUAUUUAUGUGCUGUCAGAAGUCGUGACGGCAGAGCGACACACAAAGUGAUAAAAUUAGCACACAACAA
(((...(((((...(((.((((.(((((((.........)))).)))...))))((((((((....).)))))))...))).(((.....)))....)))))...)))..... ( -25.30)
>DroVir_CAF1 29390 110 - 1
AUGAACUUAUUGCAUGCAACAUUUACCGUAUUAAUAAAUUAUGAGUAUUUAUGUGCUGUCAGAAGUCGUGACGGCAGAGCGACACACAAAGUGAUAAAAUUAGCACAAAA---
..........(((.(((.((((.(((((((.........)))).)))...))))((((((((....).)))))))...))).(((.....))).........))).....--- ( -22.60)
>DroGri_CAF1 26788 110 - 1
AUGAAAUUAUUGCAUGCAGCAUUUACCGUAUUAAUAAAUUAUAAGUAUUUAUGUGCUGUCAGAAUUCGUGACGGCAGAGCGACACACAAAGUGAUAAAAUUAGCACAAAA---
..............(((.((.............((((((.......)))))).(((((((((....).))))))))..))..(((.....))).........))).....--- ( -19.20)
>DroEre_CAF1 37755 113 - 1
GUGGAAUGAUGGCAUGCAACAUUUACCGUAUUAAUAAAUUAUGAGUAUUUAUGUGCUGUCAGAAGUCGUGACGGCAGAGCGACACACAAAGUGAUAAAAUUAGCACACAACAA
(((...((((....(((.((((.(((((((.........)))).)))...))))((((((((....).)))))))...))).(((.....))).....))))...)))..... ( -24.40)
>DroYak_CAF1 37413 113 - 1
GUGGAAUGAUGGCAUGCAACAUUUACCGUAUUAAUAAAUUAUGAGUAUUUAUGUGCUGUCAGAAGUCGUGACGGCAGAGCGACACACAAAGUGAUAAAAUUAGCACACAACAA
(((...((((....(((.((((.(((((((.........)))).)))...))))((((((((....).)))))))...))).(((.....))).....))))...)))..... ( -24.40)
>DroMoj_CAF1 37145 110 - 1
AUGAACUUAUUGCAUGCAACAUUUACCGUAUUAAUAAAUUAUGAGUAUUUAUGUGCUGUCAGAAGUCGUGACGGCAGAGCGACACACAAAGUGAUAAAAUUAGCACAAAA---
..........(((.(((.((((.(((((((.........)))).)))...))))((((((((....).)))))))...))).(((.....))).........))).....--- ( -22.60)
>consensus
AUGAAAUGAUUGCAUGCAACAUUUACCGUAUUAAUAAAUUAUGAGUAUUUAUGUGCUGUCAGAAGUCGUGACGGCAGAGCGACACACAAAGUGAUAAAAUUAGCACAAAA___
...........((.(((.((((.(((((((.........)))).)))...))))((((((((....).)))))))...))).(((.....))).........))......... (-21.24 = -21.27 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:18 2006