Locus 3772

Sequence ID 3L_DroMel_CAF1
Location 10,905,655 – 10,905,746
Length 91
Max. P 0.915386
window5883

overview

Window 3

Location 10,905,655 – 10,905,746
Length 91
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 68.99
Mean single sequence MFE -21.88
Consensus MFE -15.02
Energy contribution -15.82
Covariance contribution 0.80
Combinations/Pair 1.20
Mean z-score -1.40
Structure conservation index 0.69
SVM decision value 1.10
SVM RNA-class probability 0.915386
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10905655 91 + 23771897
UUAAUAU-------------------GUGUUCAAUUAGAACACUUUACACUUUUUCUCCCUGUGCAGAGUCUGCAGUCUUGGGGUCUGAAGUCUCCAGUCUACAGUCUCG
.......-------------------((((((.....))))))....(((...........)))..(((.(((.((.((.((((.(....).)))))).)).))).))). ( -24.60)
>DroSec_CAF1 38913 75 + 1
-----------------------------------UAGAACUCUGCACACUUUUUCUCCCUGUGCAGAGUCUGCAGUCUUGGGGUCUGAAGUCUCCAGUCUACAGUCUCG
-----------------------------------.(((((((((((((...........))))))))))(((.((.((.((((.(....).)))))).)).)))))).. ( -25.10)
>DroSim_CAF1 34417 75 + 1
-----------------------------------UAGAACUCUGCACACUUUUUCUCUCUGUGCACAAUCUGCAGUCUUGGGGUCUGAAGUCUCCAGUCUACAGUCUCG
-----------------------------------.(((....((((((...........))))))....(((.((.((.((((.(....).)))))).)).)))))).. ( -16.50)
>DroEre_CAF1 37003 93 + 1
UUCAUAU---------CUA-AACUAAGCGUUCGAUCAGAAUCCUGCACGCUUUUUCUCCCUGUGCAGAGUCCGCAGUCUUGGGGUCUGAAGUCUCCAG-------UCUCG
.......---------...-......(((..((((....)))(((((((...........))))))).)..)))((.((.((((.(....).))))))-------.)).. ( -20.00)
>DroYak_CAF1 36592 103 + 1
GUCAUGUAACCUAUUUUUAAUUCUAAAAGUUCGUUUAGAAUUCUGCACAUUUUUUGUCCCAGUGCAGAGUCUGCAGUCUUGGGGUCUGAAGUCUCCAG-------UCUCG
....((((..((......(((((((((......)))))))))((((((.............))))))))..))))...((((((.(....).))))))-------..... ( -23.22)
>consensus
_U_AU_U_____________________GUUC__UUAGAACUCUGCACACUUUUUCUCCCUGUGCAGAGUCUGCAGUCUUGGGGUCUGAAGUCUCCAGUCUACAGUCUCG
...................................((((.(((((((((...........))))))))))))).....((((((.(....).))))))............ (-15.02 = -15.82 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:17 2006