Locus 3768

Sequence ID 3L_DroMel_CAF1
Location 10,899,494 – 10,899,590
Length 96
Max. P 0.595617
window5879

overview

Window 9

Location 10,899,494 – 10,899,590
Length 96
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 92.92
Mean single sequence MFE -26.95
Consensus MFE -24.28
Energy contribution -24.53
Covariance contribution 0.25
Combinations/Pair 1.07
Mean z-score -1.17
Structure conservation index 0.90
SVM decision value 0.12
SVM RNA-class probability 0.595617
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10899494 96 - 23771897
GCUCCGCGUGAGUUCUGGCGAUAAAUCGAAAUUGUUUGCACUGCCAAAAAGCAAAUAAAUGCAUCAGGUUCGUUGGAUUCGAGGGAGGAGCACACA
(((((...(((((.(..((((..........((((((((...........))))))))...........))))..)))))).....)))))..... ( -27.30)
>DroSec_CAF1 32776 96 - 1
GCUCCGCGUGAGUUCUGGCGAUAAAUCGAAAUUGUUUGCACUGCCAAAAAGCAAAUAAAUGCAUCAGGUUCGUUGGAUUCGAGGGAGGAGCACAUC
(((((...(((((.(..((((..........((((((((...........))))))))...........))))..)))))).....)))))..... ( -27.30)
>DroSim_CAF1 28340 96 - 1
GCUCCGCGUGAGUUCUGGCGAUAAAUCGAAAUUGUUUGCACUGCCAAAAAGCAAAUAAAUGCAUCAGGUUCGUUGGAUUCGAGGGAGGAGCACAAC
(((((...(((((.(..((((..........((((((((...........))))))))...........))))..)))))).....)))))..... ( -27.30)
>DroEre_CAF1 30672 96 - 1
GCUCCGCGUGAGUUCUGGCGAUAAAUCGAAAUUGUUUGCACUGCCAAAAAGCAAAUAAAUGCAUCAGGCUCGUUGGAUUCGAGGGAGGAGCACACA
(((((...(((((.(..((((..........((((((((...........))))))))..((.....))))))..)))))).....)))))..... ( -28.40)
>DroYak_CAF1 30006 96 - 1
GCUCCGCGUGAGUUCUGGCGAUAAAUCGAAAUUGUUUGCACUGCCAAAAAGCAAAUAAAUGCAUCAGGUUCGUUGCAUUCGAGGGAGGAGUACACA
(((((((....))(((..(((..........((((((((...........))))))))(((((.(......).))))))))..))))))))..... ( -25.00)
>DroAna_CAF1 23842 96 - 1
GCUCCGCGUGAGCUCUGACGAUAAAUCGAAAUUGUUUGCACUGCCAAAAAGCAAAUAAAUGCAUCAGGUUCGGCACAGUCCGAGGAGGAGGUGGAC
.((((((.(((((.(((((((....)))...((((((((...........)))))))).....)))))))))))....((....))))))...... ( -26.40)
>consensus
GCUCCGCGUGAGUUCUGGCGAUAAAUCGAAAUUGUUUGCACUGCCAAAAAGCAAAUAAAUGCAUCAGGUUCGUUGGAUUCGAGGGAGGAGCACACA
(((((((....))(((..(((.....((((.(((..((((.(((......)))......)))).))).))))......)))..))))))))..... (-24.28 = -24.53 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:13 2006