| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,859,969 – 10,860,081 |
| Length | 112 |
| Max. P | 0.822649 |
| Location | 10,859,969 – 10,860,081 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 64.84 |
| Mean single sequence MFE | -33.64 |
| Consensus MFE | -13.45 |
| Energy contribution | -11.07 |
| Covariance contribution | -2.38 |
| Combinations/Pair | 1.57 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.40 |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.822649 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10859969 112 + 23771897 UAAAUGAUAAAAUUCGCCUCGUUUUGAGCU--AGGCGAGUGCGAGCGAGAUGGACACAGUUACGCGUGCGGGUGAACGGCAAUAAAGAAGCAGAG--UCACAGCUGUUCCG---GA-AAA ............((((((((((((......--))))))).))))).....((((.((((((.((....)).((((...((.........))....--))))))))))))))---..-... ( -31.40) >DroPse_CAF1 8974 112 + 1 GUUAAUUUCUGUUUUGCUUCGUUUUGCUCCGCAGGCCUGCGGAAAAGAGAUGGAAGAUGUAA-AUUCCAGUGUUAAUGGCAAAACGGCGGCAGU------CAGCUGUGUGUGUCAC-AUC ........(((..((((((((((((((((((((....)))))).......(((((.......-.))))).........))))))))).))))).------))).((((.....)))-).. ( -35.40) >DroSec_CAF1 9415 112 + 1 UAAAUGAUAAAAUUCGUCUCGUUUCGAGCU--AGGCGAGUGCGAGCGAGAUGGAUACAAACACGCGUCCGGGUGAACGACAAGAAAGAAGCAGAG--UCACAGCUGUUCGC---GA-AGA ...........((((((((((((.((.(((--.....))).)))))))))))))).......((((..(((.((...(((..............)--)).)).)))..)))---).-... ( -32.74) >DroEre_CAF1 9199 113 + 1 UAAAUGAUAAAAUUCGCCUCGUUUCGAGCG--GGGCGAGUGCGAGUGAGAUGAGAACAGACACGCGAACGUGGGAAUGGCAAGCAAGAAGCAGAG--UCACAGCUGUUCAG---AAAAGA ....(.((...(((((((((((..(....)--..))))).))))))...)).)((((((.((((....))))....((((..((.....))...)--)))...))))))..---...... ( -35.60) >DroYak_CAF1 9362 114 + 1 UAAAAGAUAAAAUUCGCCUCGUUUCGAGUU--GGGCGAGUGCGAGUGAGAUGGCAAAAGGCACGCGGGCGGGUGAAUGGCAAGAAAGAAGCAGAACAGCACAGCUGUUCAG---AG-AGA ...........(((((((((((((......--))))))).))))))......((...(..(((.(....).)))..).))............(((((((...)))))))..---..-... ( -31.30) >DroPer_CAF1 8786 112 + 1 GUUAAUUUCUGUUUUGCUUCGUUUUGCUCCGCAGGCCUGCGGAAAAGAGAUGGAAGAUGUAA-AUUCCAGUGUUAAUGGCAAAACGGCGGCAGU------CAGCUGUGUGUGUCAC-AUC ........(((..((((((((((((((((((((....)))))).......(((((.......-.))))).........))))))))).))))).------))).((((.....)))-).. ( -35.40) >consensus UAAAAGAUAAAAUUCGCCUCGUUUCGAGCU__AGGCGAGUGCGAGAGAGAUGGAAAAAGUCACGCGCCCGGGUGAAUGGCAAGAAAGAAGCAGAG__UCACAGCUGUUCGG___AA_AGA ...............(((((((((((.((...........))...)))))))).......(((.(....).)))...)))......(((.(((..........))))))........... (-13.45 = -11.07 + -2.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:49 2006