Locus 3737

Sequence ID 3L_DroMel_CAF1
Location 10,826,441 – 10,826,539
Length 98
Max. P 0.926691
window5837

overview

Window 7

Location 10,826,441 – 10,826,539
Length 98
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 99.18
Mean single sequence MFE -37.04
Consensus MFE -36.36
Energy contribution -36.56
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.54
Structure conservation index 0.98
SVM decision value 1.18
SVM RNA-class probability 0.926691
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10826441 98 + 23771897
UUGCAGAUACUCAGAUACACGUCCGCACUCAUUGUGCGAGCUGCUCGACGUCGUCGGAAUUCCGAUGGCGAUGAUGAGGUUGCCGCCGAUGCGAUGGA
..((((...((((.......(..(((((.....)))))..)...(((.(((((((((....))))))))).))))))).))))(((....)))..... ( -37.40)
>DroSec_CAF1 35447 98 + 1
UUGCAGAUACUCAGAUACACGUCCGCACUCAUUGUGCGAGCUGCUCGACGUCGUCGGAAUUCCGAUGGCGAUGAUGAGGUUGCCGCCGAUGCGAUGGA
..((((...((((.......(..(((((.....)))))..)...(((.(((((((((....))))))))).))))))).))))(((....)))..... ( -37.40)
>DroSim_CAF1 37053 98 + 1
UUGCAGAUACUCAGAUACACGUCCGCACUCAUUGUGCGAGCUGCUCGACGUCGUCGGAAUUCCGAUGGCGAUGAUGAGGUUGCCGCCGAUGCGAUGGA
..((((...((((.......(..(((((.....)))))..)...(((.(((((((((....))))))))).))))))).))))(((....)))..... ( -37.40)
>DroEre_CAF1 36875 98 + 1
UUGCAGAUACUCAGAUACACGUCCGCACUCAUUGUGCGAGCUGCUCGGCGUCGUCGGAAUUCCGAUGGCGAUGAUGAGGUUGCCGCCGAUGCGAUGGA
...................(((((((((.....)))))....(((((((...(((((....)))))((((((......))))))))))).)))))).. ( -37.60)
>DroYak_CAF1 36239 98 + 1
UUGCAGAUACUCAGAUACACGUCCGCACUCAUUGUGCGAGCUGCUCGACGUCGUCGGAAUUCCGAUGGCGAUGAUGAGGUUGCCGCCGAUCCGAUGGA
..((((...((((.......(..(((((.....)))))..)...(((.(((((((((....))))))))).))))))).))))..(((......))). ( -35.40)
>consensus
UUGCAGAUACUCAGAUACACGUCCGCACUCAUUGUGCGAGCUGCUCGACGUCGUCGGAAUUCCGAUGGCGAUGAUGAGGUUGCCGCCGAUGCGAUGGA
..((((...((((.......(..(((((.....)))))..)...(((.(((((((((....))))))))).))))))).))))(((....)))..... (-36.36 = -36.56 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:32 2006