Locus 3729

Sequence ID 3L_DroMel_CAF1
Location 10,794,391 – 10,794,487
Length 96
Max. P 0.563294
window5823

overview

Window 3

Location 10,794,391 – 10,794,487
Length 96
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 78.88
Mean single sequence MFE -23.28
Consensus MFE -9.58
Energy contribution -10.86
Covariance contribution 1.28
Combinations/Pair 1.38
Mean z-score -1.97
Structure conservation index 0.41
SVM decision value 0.06
SVM RNA-class probability 0.563294
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10794391 96 - 23771897
UUAUAAAAAAUCAGUAUGUCUCCGCCAUGAGUUACUUGAACAGCUUAAAAUAGCAAACCAAAA-GUGGAAACACCGGGG----GGGGCGUGGAAAACAUUG
..............(((((((((.((.((((((........))))))................-(((....))).)).)----)))))))).......... ( -25.50)
>DroSec_CAF1 3667 96 - 1
UUAUAAAAAAGCAGUACGUCUCCGCCAUGAGAUACUCAAAGAGCUUAAAAUAGCAAACCAAAAGGUGGAAACACCGGG-----GGGGCGUGGAAAACAUUG
..............(((((((((.((.((((...))))....(((......))).........((((....)))))))-----)))))))).......... ( -30.40)
>DroSim_CAF1 5319 96 - 1
UUAUAAAAAAGCAGUGUGUCUCCGCCAUGAUUUACUCAAAGAGCCUUAAAUAGCAAACCAAAAGGUGGAAACAUCGGG-----GGGGCGUGAAAAACAUUG
...........((((((...((((((................((........))...((....((((....))))...-----)))))).))...)))))) ( -24.50)
>DroEre_CAF1 5311 101 - 1
UUAUAAAAAAGCAGUACGUCUUUGCCGUGAGUUACUUAACGAACCUAAAAUAGCAAGCCAAAAAGUGGGAACGCCGAGGGGUGGGGGCGUGGAAAGCAUUG
..........((..((((((((..((((..(((....)))..)).............((.....(((....)))...))))..))))))))....)).... ( -23.10)
>DroYak_CAF1 3779 79 - 1
UUACAAAAAAGCAGUACGUCUUCGGCAUGAGUUACUUAAAGAGCUUAAAAUGGCAAACCAAAAAGUGGAAACACCGGGG----------------------
..........((.....(.(....)).((((((........)))))).....))...((.....(((....)))..)).---------------------- ( -12.90)
>consensus
UUAUAAAAAAGCAGUACGUCUCCGCCAUGAGUUACUUAAAGAGCUUAAAAUAGCAAACCAAAAAGUGGAAACACCGGGG____GGGGCGUGGAAAACAUUG
..................(((.((((........(((.....(((......)))..........(((....))).))).......)))).)))........ ( -9.58 = -10.86 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:19 2006