Locus 3712

Sequence ID 3L_DroMel_CAF1
Location 10,776,193 – 10,776,294
Length 101
Max. P 0.963941
window5804

overview

Window 4

Location 10,776,193 – 10,776,294
Length 101
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 90.55
Mean single sequence MFE -21.35
Consensus MFE -19.02
Energy contribution -19.30
Covariance contribution 0.28
Combinations/Pair 1.08
Mean z-score -1.70
Structure conservation index 0.89
SVM decision value 1.56
SVM RNA-class probability 0.963941
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10776193 101 - 23771897
ACUUCCAUGUCCUUUCUUGGCUGCUCCUUUUUUU------------UCCUUAGCCGAGCUUUGCUUGCAUUUUAUUACUUAACGCUUAAGUGUGCUUCUUAGGAAGGAAAAAG
.........((((((((.((..((..........------------......((.((((...)))))).............((((....))))))..)).))))))))..... ( -20.90)
>DroSec_CAF1 109784 101 - 1
ACUUUCAUGUCCUUUCUUGGCUGCUCCGUUUUUU------------UCCUCUGCCGAGCUUUGCUUGCAUUUUAUUACUUUCCGCUUAAGUGUGCUUCUUAGGAAGGAAAAAG
.((((....((((((((.(((.((((.((.....------------......)).))))...))).((((......((((.......)))))))).....)))))))).)))) ( -20.60)
>DroSim_CAF1 112753 101 - 1
ACUUCCAUGUCCUUUCUUGGCUGCUCCUUUUUUU------------UCCUCAGCCGAGCUUUGCUUGCAUUUUAUUACUUAACGCUUAAGUGUGCUUCUUAGGAAGGAAAAAG
.(((((.........((((((((...........------------....))))))))........((((......(((((.....)))))))))......)))))....... ( -21.46)
>DroEre_CAF1 115081 113 - 1
ACUUUCCUGUCCCUUCUUGGCUGCUCCUUUUUUUUUUUUUUUGCUUUUCUCAGCCGAGCUUUGCUUGCAUUUUAUUACUUAACGCUUAAGUGUGCUUCUUAGGAAGGAAAAAG
.((((((((......((((((((...........................))))))))........((((......(((((.....)))))))))....))))))))...... ( -22.73)
>DroYak_CAF1 126456 101 - 1
ACUUUCCUGUCCCUUCUUGGCUGCUCCUUUUUUU------------UUCUCAGCCAAGCUUUGCUUGCAUUUUAUUACUUAACGCUUAAGUGUGCUUCUUAGAAAGGAAAAAG
..((((((.((....((((((((...........------------....))))))))........((((......(((((.....)))))))))......)).))))))... ( -21.06)
>consensus
ACUUUCAUGUCCUUUCUUGGCUGCUCCUUUUUUU____________UCCUCAGCCGAGCUUUGCUUGCAUUUUAUUACUUAACGCUUAAGUGUGCUUCUUAGGAAGGAAAAAG
.........((((((((.((..((............................((.((((...)))))).......((((((.....)))))).))..)).))))))))..... (-19.02 = -19.30 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:00 2006