Locus 3702

Sequence ID 3L_DroMel_CAF1
Location 10,768,256 – 10,768,363
Length 107
Max. P 0.899775
window5784

overview

Window 4

Location 10,768,256 – 10,768,363
Length 107
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 94.91
Mean single sequence MFE -19.78
Consensus MFE -18.69
Energy contribution -18.55
Covariance contribution -0.14
Combinations/Pair 1.05
Mean z-score -1.17
Structure conservation index 0.94
SVM decision value 1.01
SVM RNA-class probability 0.899775
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10768256 107 - 23771897
A-----CUGUGGCACAGAUAAUUUGCCAUCAGCAGCGCCAAAUGUAAUCCGCCAUAUAACCGUCUAACGGUAACUCAAAGCCAACAUAAAUAUGCGCAAAGCCAGCAACAAC--------
.-----.((((((..........(((.....)))((((...(((........)))...((((.....))))......................))))...)))).)).....-------- ( -19.50)
>DroSec_CAF1 101931 107 - 1
A-----CUGUGGCAUAGAUAAUUUGCCAUCAGCAGCGCCAAAUGUAAUCCGCCUUAUAACCGUCUAACGGUAACUCAAAGCCAACAUAAAUAUGCGCAAAGCCAGCAACAAC--------
.-----((((((((.........))))).)))..((((....(((((......)))))((((.....))))......................))))...............-------- ( -21.20)
>DroSim_CAF1 104827 107 - 1
A-----CUGUGGCACAGAUAAUUUGCCAUCAGCAGCGCCAAAUGUAAUCCGCCAUAUAACCGUCUAACGGUAACUCAAAGCCAACAUAAAUAUGCGCAAAGCCAGCAACAAC--------
.-----.((((((..........(((.....)))((((...(((........)))...((((.....))))......................))))...)))).)).....-------- ( -19.50)
>DroEre_CAF1 106845 107 - 1
A-----CUGUGGCACAGAUAAUUUGCCAUCAGCAGCGCCAAAUGUAAUCCGCCAUAUAACCGUCUAACGGUAACUCAAAGCCAACAUAAAUAUGCGCAAAGCCAGCAACAAC--------
.-----.((((((..........(((.....)))((((...(((........)))...((((.....))))......................))))...)))).)).....-------- ( -19.50)
>DroYak_CAF1 118101 107 - 1
A-----CUGUGGCACAGAUAAUUUGCCAUCAGCAGCGCCAAAUGUAAUCCGCCAUAUAACCGUCUAACGGUAACUCAAAGCCAACAUAAAUAUGCGCAAAGCCAGCAACAAC--------
.-----.((((((..........(((.....)))((((...(((........)))...((((.....))))......................))))...)))).)).....-------- ( -19.50)
>DroAna_CAF1 102718 120 - 1
AGACUCUUGUGGCACAGAUAAUUUGCCAUCAGCAGCGCCAAAUGUAAUCCGCCAUAUAACCGUCUAACGGUAACUCAAAGCCAACAUAAAUAUGCGCAAAACCAGCAACAACCACAACAA
......((((((...........(((.....)))((((...(((........)))...((((.....))))......................))))..............))))))... ( -19.50)
>consensus
A_____CUGUGGCACAGAUAAUUUGCCAUCAGCAGCGCCAAAUGUAAUCCGCCAUAUAACCGUCUAACGGUAACUCAAAGCCAACAUAAAUAUGCGCAAAGCCAGCAACAAC________
......((((((((.........))))).)))..((((....((((........))))((((.....))))......................))))....................... (-18.69 = -18.55 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:42 2006