| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,756,612 – 10,756,732 |
| Length | 120 |
| Max. P | 0.581086 |
| Location | 10,756,612 – 10,756,732 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 94.92 |
| Mean single sequence MFE | -33.20 |
| Consensus MFE | -29.60 |
| Energy contribution | -30.35 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.89 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.581086 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10756612 120 + 23771897 GAUGGGCCAUGUAAUGGGCUGUGGUUUGGGCGUGGCAUAUCGCAUAAUGUGUGUAUACAGUUGAUAGACAUGAAUGGGAAAGUUUGUUUUCGGCCAAUGAGUCCGAAACACGGAUUAAUA ....((((((((.((.(((((((...((.((((.((.....))...)))).))..))))))).))..))))......(((((....)))))))))....((((((.....)))))).... ( -32.90) >DroSec_CAF1 90356 119 + 1 GAUGGGCCAUGUAAUGGGCUGUGGC-UGGGCGUGGCAUAUCGCAUAAUGUGUGUAUACAGUUGAUAGACAUGAAUGGGAAAGUUUGUUUACGGCCAAUGAGUCCGAAACACGGAUUAAUA ....((((((((.((.(((((((..-.(.((((.((.....))...)))).)...))))))).))..))))((((..(....)..))))..))))....((((((.....)))))).... ( -31.80) >DroSim_CAF1 92897 118 + 1 GAUGGGCCAUGUAAUGGGCUGUGGC-UGGGCGUGGCAUAUCGCAUAAUGUGUGUAUACAGUUGAUGGACAUGAAUG-GAAAGUUUGUUUUCGGCCAAUGAGUCCGAAACACGGAUUAAUA ....((((((((.((.(((((((..-.(.((((.((.....))...)))).)...))))))).))..)))).....-(((((....)))))))))....((((((.....)))))).... ( -34.00) >DroEre_CAF1 94916 119 + 1 GAUGGGCCAUGUAAUGGGCUGUGGC-UGGGCGUGGCAUAUCGCAUAAUGUGUGUAUACAGUUGAUAGACAUGAAUGGGAAAGUUGGUUUUCGGCCAGUGAGUCCGAAACACGGAUUAAAA ((((.(((((((....(((....))-)..))))))).))))...((((.(((((...(((((....))).))....(((..((((((.....))))))...)))...))))).))))... ( -34.50) >DroYak_CAF1 105837 119 + 1 GAUGGGCCAUGUAAUGGGCUGUGGC-UGGGCGUGGCAUAUCGCAUAAUGUGUGUAUACAGUUGAUAGACAUGAAUGGGAAAGUUUGUUUUCGGCCAAUGAGUCCGAAACACGGAUUAAAU ((((.(((((((....(((....))-)..))))))).))))...((((.(((((........(((((((............)))))))(((((.(.....).)))))))))).))))... ( -33.10) >DroAna_CAF1 91454 118 + 1 GAUGGGCCAUGUAAUGCGCUUCGGC-UGGGCGUGGCAUAUCGCAUAAUGUGUGUAUACAGUUGAUAGACAUGAAUGGAAAAGUUUGUUUUCGGCAAAUGAGCCCGAAACACGGAUCAC-A ((((.(((((((.....((....))-...))))))).)))).(((.((((.(((.........))).))))..))).....(((((((((((((......).)))))).))))))...-. ( -32.90) >consensus GAUGGGCCAUGUAAUGGGCUGUGGC_UGGGCGUGGCAUAUCGCAUAAUGUGUGUAUACAGUUGAUAGACAUGAAUGGGAAAGUUUGUUUUCGGCCAAUGAGUCCGAAACACGGAUUAAUA ((((.(((((((.....((....))....))))))).))))...((((.(((((........(((((((............)))))))((((((......).)))))))))).))))... (-29.60 = -30.35 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:17 2006