Locus 3688

Sequence ID 3L_DroMel_CAF1
Location 10,756,314 – 10,756,433
Length 119
Max. P 0.968429
window5757

overview

Window 7

Location 10,756,314 – 10,756,433
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 90.52
Mean single sequence MFE -21.18
Consensus MFE -18.36
Energy contribution -18.42
Covariance contribution 0.06
Combinations/Pair 1.04
Mean z-score -1.81
Structure conservation index 0.87
SVM decision value 1.63
SVM RNA-class probability 0.968429
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10756314 119 + 23771897
CGAGACCCUUUUUGGAAUUACAGACCAUUGCUAAUUUAUGCGCCUUUUGUAUGAUUUUUCAUUUGGGUUUU-UACUUUUCUUUUGCUCCGGCAAGGGUAUUCCCCAUUUCCCCCUCAUCC
.(((((((....(((((.((((((....(((........)))...)))))).....)))))...)))))))-..........((((....))))(((.....)))............... ( -23.30)
>DroSec_CAF1 90077 101 + 1
CGAGACCCUUUUUGGAAUUACAGACCAUUGCUAAUUUAUGCGCCUUUUGUAUGAUUUUUCAUUUGGGUUUU-UACUUUUCUUUUGCUC----------------CAUUUC--CCUCAUCC
.(((((((....(((((.((((((....(((........)))...)))))).....)))))...)))))))-................----------------......--........ ( -16.30)
>DroSim_CAF1 92602 117 + 1
CGAGACCCUUUUUGGAAUUACAGACCAUUGCUAAUUUAUGCGCCUUUUGUAUGAUUUUUCAUUUGGGUUUU-UACUUUUAUUUUGCUCUGGCAAGGGUAUUACCCAUUUC--CCUCAUCC
.(((((((....(((((.((((((....(((........)))...)))))).....)))))...)))))))-..........((((....))))(((.....))).....--........ ( -24.20)
>DroEre_CAF1 94622 117 + 1
UAAGACCCUUUUUGGAAUUACAGACCAUUGCUAAUUUAUGCGCCUUUUGUAUGAUUUUUCAUUUGGGUUUU-UACUUUUCUUUUGCUCUUGCCAGGGUAUUACCCAUUUC--CCUCGUCC
.(((((((....(((((.((((((....(((........)))...)))))).....)))))...)))))))-............((....))..(((.....))).....--........ ( -21.20)
>DroYak_CAF1 105530 118 + 1
CAAGACCCUUUUUGGAAUUACAGACCAUUGCUAAUUUAUGCGCCUUUUGUAUGAUUUUUCAUUUGGGUUUUAUACUUUUCUUUUGCUCGGCCAAGGGUAUUCCCCAUUUC--CCUCAUCC
.(((((((....(((((.((((((....(((........)))...)))))).....)))))...))))))).................((...((((............)--)))...)) ( -20.90)
>consensus
CGAGACCCUUUUUGGAAUUACAGACCAUUGCUAAUUUAUGCGCCUUUUGUAUGAUUUUUCAUUUGGGUUUU_UACUUUUCUUUUGCUCUGGCAAGGGUAUUACCCAUUUC__CCUCAUCC
.(((((((....(((((.((((((....(((........)))...)))))).....)))))...))))))).......................(((.....)))............... (-18.36 = -18.42 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:16 2006