Locus 3658

Sequence ID 3L_DroMel_CAF1
Location 10,716,128 – 10,716,225
Length 97
Max. P 0.641470
window5703

overview

Window 3

Location 10,716,128 – 10,716,225
Length 97
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 89.84
Mean single sequence MFE -17.20
Consensus MFE -14.02
Energy contribution -13.42
Covariance contribution -0.60
Combinations/Pair 1.21
Mean z-score -1.45
Structure conservation index 0.82
SVM decision value 0.22
SVM RNA-class probability 0.641470
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10716128 97 + 23771897
UAUUUUUUUA-CACACAAAAAUCAGGUGUGAUGCGGUAUGUAAUACACCCCGAAAAUCUGAUACUCCAUUGCGCU----CCAACCCCUUAAAUCACCUGACC
..........-..........(((((((.(((.(((..((.....))..)))...)))((......)).......----..............))))))).. ( -16.00)
>DroSec_CAF1 50250 98 + 1
UAUUUUCUUA-CCCACAAAAAUCAGGUGUGGUGCGGUAUGUAAUACACCCCGAAAAUCUGAUACUCCAUUGCGUU---UCGAACCCCUUGAGCAACCUGACC
..........-..........(((((((..(((.(((((.....................))))).)))..)(((---.(((.....)))))).)))))).. ( -17.70)
>DroSim_CAF1 52086 98 + 1
UAUUUUCUUA-CCCACAAAAAUCAGGUGUGAUGCGGUAUGUAAUACACCCCGAAAAUCUGAUACUCCAUUGCGUU---UCGAACCCCUUAAGCCACCUGACC
..........-..........(((((((.(((.(((..((.....))..)))...)))(((.((........)).---)))............))))))).. ( -18.50)
>DroEre_CAF1 54586 101 + 1
UAUUUUCUUA-CCCACAAAAAUCAGGUGUGAUGCGGUAUGUAAUACACCCCGAAAAUCUGAUACUCCAUCGCAUCCGCUCGCACCCCUUAAACAACCUGACC
..........-.............(((((((.((((.((((..........(.....).(((.....))))))))))))))))))................. ( -20.40)
>DroYak_CAF1 64115 101 + 1
UAUUUUCUUAACCCACAAAAAUCAGGUGUGAUGCGGUAUGUAAUACACCCCGAAAAUCUGAUACUCCCUCCCCCCCAC-CGAACCCCUUAAACAACCUGACC
.....................(((((((((((.(((..((.....))..)))...))).((.......))........-............)).)))))).. ( -13.40)
>consensus
UAUUUUCUUA_CCCACAAAAAUCAGGUGUGAUGCGGUAUGUAAUACACCCCGAAAAUCUGAUACUCCAUUGCGUU___UCGAACCCCUUAAACAACCUGACC
.....................(((((((((((.(((..((.....))..)))...))).(((.....))).....................)).)))))).. (-14.02 = -13.42 +  -0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:24 2006