| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,714,642 – 10,714,755 |
| Length | 113 |
| Max. P | 0.803392 |
| Location | 10,714,642 – 10,714,755 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 91.08 |
| Mean single sequence MFE | -34.08 |
| Consensus MFE | -32.84 |
| Energy contribution | -32.36 |
| Covariance contribution | -0.48 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.96 |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.803392 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10714642 113 - 23771897 GUAGUCACAAU-U-UUUUUCUUAACUUCGUAAUACCCUUCUUUUCGCCAUAGGGUAUUUGCGGAACGAUCAAGCGCACACGCAGCGCAGUCGUUGGCGAGCAUGACGAAAGUCCU ((.((((....-.-...........(((((((((((((............)))))).)))))))(((((...((((.......)))).)))))))))..))..(((....))).. ( -32.40) >DroSec_CAF1 48830 114 - 1 GCAGUCACAAU-AUUCUUCCUUAAGUUCGUGAUACCCUUCUUUUCGCCAUAGGGUAUUUGCGGAACGAUAAAGCGCACACGCAGCGCAGUCGUCGGCGAGCAUGACGAAAGUCCU ((.(((.....-.............((((..(((((((............)))))).)..))))(((((...((((.......)))).))))).)))..))..(((....))).. ( -33.40) >DroSim_CAF1 50619 112 - 1 GCAGUC--AAU-AUUCUUCCUUAAGUUCGUGAUACCCUUCUUUUUGCCAUAGGGUAUUUGCGGAACGAUCAAGCGCACACGCAGCGCAGUCGUCGGCGAGCAUGACGAAAGUCCU ((.(((--...-.............((((..(((((((............)))))).)..))))(((((...((((.......)))).))))).)))..))..(((....))).. ( -33.40) >DroEre_CAF1 53068 114 - 1 GCAGCCAUAAU-AUUUUUCCCCAAGUUCGUGAUACCCUUUUUUUUGCCAUAGGGUAUUUGCGGAACGAUCAAGCGCACACGCAGCGCAGUCGUCGGCGAGCAUGACGAAAGUCCU ((.(((.....-.............((((..(((((((............)))))).)..))))(((((...((((.......)))).))))).)))..))..(((....))).. ( -36.10) >DroYak_CAF1 62620 113 - 1 GCUGUCAUAGUUAGUUUU--CUAAGUUCGUGAUACCCUUUUUCUUGCCAUAGGGUAUUUGCGGAACGAUCAAGCGCACACGCAGCGCAGUCGUCGGCGAGCAUGACGAAAGUCCU ((((((....((((....--)))).((((..(((((((............)))))).)..))))(((((...((((.......)))).))))).))).)))..(((....))).. ( -35.10) >consensus GCAGUCACAAU_AUUUUUCCUUAAGUUCGUGAUACCCUUCUUUUUGCCAUAGGGUAUUUGCGGAACGAUCAAGCGCACACGCAGCGCAGUCGUCGGCGAGCAUGACGAAAGUCCU ((.(((...................(((((((((((((............)))))).)))))))(((((...((((.......)))).))))).)))..))..(((....))).. (-32.84 = -32.36 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:21 2006