| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,692,378 – 10,692,484 |
| Length | 106 |
| Max. P | 0.809455 |
| Location | 10,692,378 – 10,692,484 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 77.87 |
| Mean single sequence MFE | -27.01 |
| Consensus MFE | -14.56 |
| Energy contribution | -14.60 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.809455 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10692378 106 - 23771897 CCCGCGACC-UGCGACCUACAAUCCACCGCCCUCCC----------CCCCCUUUCAACA--CAGCCCCUCCCCCUUCCGCGGAUCCUUUUCUCUGGCUGUGUUAGAAGCGUGGUGGAUU ..(((....-.)))......((((((((((......----------....(((..((((--(((((.........((....))...........)))))))))..))).)))))))))) ( -32.85) >DroSec_CAF1 26806 99 - 1 CCCGCGACC-UGCGACCUACAAUCCAGCGCCCU-CC-----------CCCCUUUCACCA-----UCCCUCCCCUUUCCGCGGAUCCUUUUCUCUGGCUGUGUUAGAAGC--GGUGGAUU ..(((....-.)))......((((((.(((...-..-----------............-----....(((.(.....).)))........((((((...)))))).))--).)))))) ( -19.90) >DroSim_CAF1 28368 100 - 1 CCCGCGACC-UGCGACCUACAAUCCAGCGCCCUUCC-----------CUCCUUUCACCA-----UUCCUCCCCUUCCCGCGGAUCCUUUUCUCUGGCUGUGUUAGAAGC--GGUGGAUU ...(((..(-((.((.......))))))))......-----------............-----.(((.((.((((.(((((..((........)))))))...)))).--)).))).. ( -20.50) >DroEre_CAF1 30287 113 - 1 CCCGCGACC-UGCGACCUACAAUACACCGCCCAUCCCCUGCCCCCAUCCCCCUUCACCAACCUGCCCUACC---ACCAGUGGAUCCUUUUCUCUGGUUGGGUUAGAAGC--GGUGGAUU ..(((....-.)))..........((((((.((.....)).....................((((((....---(((((.(((.....))).))))).))).)))..))--)))).... ( -26.60) >DroYak_CAF1 39405 100 - 1 UCCGCGACCCCGCGACCUACAAUCCACCGC--------UACCCCC-UUCCCUUUCACCA-----CCCUUUC---ACCAGCGGAUCCUUUUCUCUGGUUGGGUUAGAAGC--GGUGGAUU ..((((....))))......((((((((((--------(......-.......((...(-----(((....---(((((.(((.....))).))))).))))..)))))--)))))))) ( -35.21) >consensus CCCGCGACC_UGCGACCUACAAUCCACCGCCCU_CC___________CCCCUUUCACCA_____CCCCUCCCC_UCCCGCGGAUCCUUUUCUCUGGCUGUGUUAGAAGC__GGUGGAUU ..((((....))))......((((((((...................................................((((........))))(((........)))..)))))))) (-14.56 = -14.60 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:58 2006