| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,681,829 – 10,681,936 |
| Length | 107 |
| Max. P | 0.950902 |
| Location | 10,681,829 – 10,681,936 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 72.88 |
| Mean single sequence MFE | -22.81 |
| Consensus MFE | -11.18 |
| Energy contribution | -13.55 |
| Covariance contribution | 2.37 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.49 |
| SVM decision value | 1.41 |
| SVM RNA-class probability | 0.950902 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10681829 107 + 23771897 CAUAUAACAUAGGAAAAUC-----------AAUUAGAUACGUCUUAAAAUACAAUAAAAACAAAAAUGGGCUUAAAACGUCCCACGUUGGGCGC--GUAACCUCAUUAGUUGUAUAACAU .(((((((.(((((..(((-----------.....)))...)))))..................((((((.(((...(((((......))))).--.))).)))))).)))))))..... ( -22.00) >DroSec_CAF1 16163 120 + 1 UAUAUAACACAGAAAAAUAAUGCUUUUUAAAAUCAUACACGUCUUAAAAUACAAUAAAUACAAAAAUGGGGUUACACAGUCCCACGUUGGGCGGCACUAAACUCAUUAGUUGUAUAACAU ((((((((............((..((((((.((.......)).))))))..))...........((((((........((((......)))).........)))))).)))))))).... ( -17.03) >DroSim_CAF1 17390 120 + 1 AAAAUAACACAGAAAAACAAUGCUUUUUAAAAUCAUACACGUCUUAAAAUUCAAUAAAUACAAAAAUGGGGUUACAACGUACCACGUUGGGCGCCACUAACCUCAUUAGUUGUAUAACAU ....................((..((((((.((.......)).))))))..))....((((((.(((((((((((((((.....)))))(....)..))))))))))..))))))..... ( -21.30) >DroEre_CAF1 16774 109 + 1 CACAUAA----------CAAGACUUUUUG-AACCGGAGAAGUCUUAAAAUACAUUUAAUACAAAGCUGGUGCUAAAACGCCCCACGUUGGGCGCCAGUUACUGCACUCGUUAUAUAACGC ...((((----------(((((((((((.-.....))))))))))..................((((((((((..((((.....)))).)))))))))).........)))))....... ( -30.90) >consensus CAUAUAACACAGAAAAACAAUGCUUUUUA_AAUCAGACACGUCUUAAAAUACAAUAAAUACAAAAAUGGGGUUAAAACGUCCCACGUUGGGCGCCACUAACCUCAUUAGUUGUAUAACAU .........................................................((((((.((((((((((...(((((......)))))....))))))))))..))))))..... (-11.18 = -13.55 + 2.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:44 2006