Locus 3623

Sequence ID 3L_DroMel_CAF1
Location 10,663,465 – 10,663,557
Length 92
Max. P 0.993998
window5649

overview

Window 9

Location 10,663,465 – 10,663,557
Length 92
Sequences 4
Columns 94
Reading direction forward
Mean pairwise identity 72.23
Mean single sequence MFE -12.20
Consensus MFE -11.36
Energy contribution -11.17
Covariance contribution -0.19
Combinations/Pair 1.17
Mean z-score -1.30
Structure conservation index 0.93
SVM decision value 2.44
SVM RNA-class probability 0.993998
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10663465 92 + 23771897
AAUCCUAGCCAGUAAGAAGA-UUGCCCCGUUUUUCUAGGGGCGCACACCACACACACACAAACACACACAAACCAUUCAACCAACAAAUCC-CC
....................-..(((((.........))))).................................................-.. ( -10.80)
>DroPse_CAF1 14977 75 + 1
AAUGCUAGCC-GUAAGACGAACUGCCCCGUU-UUCUAGGGGCAC-------AC-C------ACAUCCAUCCCCUAUUCACGCCCGAC--ACCC-
...((..(.(-....).)....((((((...-.....)))))).-------..-.------...................)).....--....- ( -13.30)
>DroSec_CAF1 8097 77 + 1
AAUCCUAGCCAGUAAGAAGA-UUGCCCCGUUUUUCUAGGGGCAC-------ACACA------CACACACAAACCAUUCAAUCACCAC--CC-CC
....................-.((((((.........)))))).-------.....------.........................--..-.. ( -11.40)
>DroPer_CAF1 16140 75 + 1
AAUGCUAGCC-GUAAGACGAACUGCCCCGUU-UUCUAGGGGCAC-------AC-C------ACAUCCAUCCCCUAUUCACGCCCGAC--ACCC-
...((..(.(-....).)....((((((...-.....)))))).-------..-.------...................)).....--....- ( -13.30)
>consensus
AAUCCUAGCC_GUAAGAAGA_CUGCCCCGUU_UUCUAGGGGCAC_______AC_C______ACACACACAAACCAUUCAAGCACCAC__AC_C_
......................((((((.........))))))................................................... (-11.36 = -11.17 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:31 2006